KEGG   PATHWAY: mbs00020
Entry
mbs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Marinobacter sp. BSs20148
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbs00020  Citrate cycle (TCA cycle)
mbs00020

Module
mbs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mbs00020]
mbs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mbs00020]
mbs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mbs00020]
mbs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbs00020]
Other DBs
GO: 0006099
Organism
Marinobacter sp. BSs20148 [GN:mbs]
Gene
MRBBS_1703  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
MRBBS_2224  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
MRBBS_3639  acnA; Aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MRBBS_2454  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MRBBS_0106  icd2; Isocitrate dehydrogenase [NADP] 2 [KO:K00031] [EC:1.1.1.42]
MRBBS_1984  idp1; putative isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MRBBS_1708  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MRBBS_1709  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MRBBS_1710  lpdG; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MRBBS_3515  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MRBBS_1712  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MRBBS_1711  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MRBBS_1706  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MRBBS_1707  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MRBBS_1704  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
MRBBS_1705  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
MRBBS_1133  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
MRBBS_3453  fumC1; Fumarate hydratase class II 1 [KO:K01679] [EC:4.2.1.2]
MRBBS_3449  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MRBBS_1985  mqo2; putative malate:quinone oxidoreductase 2 [KO:K00116] [EC:1.1.5.4]
MRBBS_2714  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01959] [EC:6.4.1.1]
MRBBS_2715  pycB; Pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
MRBBS_3671  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
MRBBS_3317  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MRBBS_3316  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbs00010  Glycolysis / Gluconeogenesis
mbs00053  Ascorbate and aldarate metabolism
mbs00061  Fatty acid biosynthesis
mbs00071  Fatty acid degradation
mbs00190  Oxidative phosphorylation
mbs00220  Arginine biosynthesis
mbs00250  Alanine, aspartate and glutamate metabolism
mbs00280  Valine, leucine and isoleucine degradation
mbs00350  Tyrosine metabolism
mbs00470  D-Amino acid metabolism
mbs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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