KEGG   PATHWAY: mby00010
Entry
mby00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Methanosarcina barkeri MS
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mby00010  Glycolysis / Gluconeogenesis
mby00010

Module
mby_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:mby00010]
mby_M00002  Glycolysis, core module involving three-carbon compounds [PATH:mby00010]
mby_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mby00010]
Other DBs
GO: 0006096 0006094
Organism
Methanosarcina barkeri MS [GN:mby]
Gene
MSBRM_2944  Glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
MSBRM_2497  ADP-dependent glucokinase [KO:K00918] [EC:2.7.1.146 2.7.1.147]
MSBRM_2498  ADP-dependent phosphofructokinase [KO:K00918] [EC:2.7.1.146 2.7.1.147]
MSBRM_2542  Fructose-1,6-bisphosphatase, GlpX type [KO:K02446] [EC:3.1.3.11]
MSBRM_2208  Fructose-bisphosphate aldolase/6-deoxy-5-ketofructose 1-phosphate synthase [KO:K16305] [EC:4.1.2.13 2.2.1.11]
MSBRM_2781  hypothetical protein [KO:K16305] [EC:4.1.2.13 2.2.1.11]
MSBRM_0291  2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [KO:K16306] [EC:4.1.2.13 2.2.1.10]
MSBRM_0075  2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [KO:K16306] [EC:4.1.2.13 2.2.1.10]
MSBRM_0068  Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
MSBRM_2242  NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal [KO:K00150] [EC:1.2.1.59]
MSBRM_1921  NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal [KO:K00150] [EC:1.2.1.59]
MSBRM_2512  Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
MSBRM_1923  Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
MSBRM_2062  Phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
MSBRM_2210  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
MSBRM_3299  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
MSBRM_0136  hypothetical protein [KO:K15635] [EC:5.4.2.12]
MSBRM_2118  Enolase [KO:K01689] [EC:4.2.1.11]
MSBRM_2782  Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
MSBRM_0488  Pyruvate,phosphate dikinase [KO:K01006] [EC:2.7.9.1]
MSBRM_2209  Phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
MSBRM_1744  Phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
MSBRM_3494  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MSBRM_1591  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSBRM_3495  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSBRM_3492  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
MSBRM_3493  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
MSBRM_2215  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MSBRM_2214  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MSBRM_1666  Alcohol dehydrogenase [KO:K13954] [EC:1.1.1.1]
MSBRM_0272  Alcohol dehydrogenase [KO:K13979] [EC:1.1.1.2]
MSBRM_2266  Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase [KO:K01895] [EC:6.2.1.1]
MSBRM_0915  Acetyl-CoA synthetase (ADP-forming) alpha chain [KO:K01905] [EC:6.2.1.13]
MSBRM_2523  Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative [KO:K22224] [EC:6.2.1.13]
MSBRM_2207  Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
MSBRM_0324  Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mby00020  Citrate cycle (TCA cycle)
mby00030  Pentose phosphate pathway
mby00500  Starch and sucrose metabolism
mby00620  Pyruvate metabolism
mby00640  Propanoate metabolism
mby00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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