KEGG   PATHWAY: mcht00020
Entry
mcht00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium chitae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mcht00020  Citrate cycle (TCA cycle)
mcht00020

Module
mcht_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mcht00020]
mcht_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mcht00020]
mcht_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mcht00020]
mcht_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mcht00020]
mcht_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mcht00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium chitae [GN:mcht]
Gene
MCHIJ_22690  citrate synthase [KO:K01647] [EC:2.3.3.1]
MCHIJ_22720  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MCHIJ_45240  gltA1; citrate synthase [KO:K01659] [EC:2.3.3.5]
MCHIJ_41100  acnA; aconitate hydratase A [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MCHIJ_37090  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MCHIJ_48840  hypothetical protein [KO:K00658] [EC:2.3.1.61]
MCHIJ_27020  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MCHIJ_03720  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MCHIJ_30960  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MCHIJ_30970  2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MCHIJ_23410  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MCHIJ_23400  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MCHIJ_51410  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MCHIJ_06780  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MCHIJ_51420  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MCHIJ_06790  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MCHIJ_51390  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MCHIJ_51400  putative succinate dehydrogenase, hydrophobic membrane anchor protein SdhD [KO:K00242]
MCHIJ_25340  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MCHIJ_50430  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MCHIJ_44860  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MCHIJ_45640  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MCHIJ_07330  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MCHIJ_33680  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MCHIJ_48830  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MCHIJ_34170  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mcht00010  Glycolysis / Gluconeogenesis
mcht00053  Ascorbate and aldarate metabolism
mcht00061  Fatty acid biosynthesis
mcht00062  Fatty acid elongation
mcht00071  Fatty acid degradation
mcht00190  Oxidative phosphorylation
mcht00220  Arginine biosynthesis
mcht00250  Alanine, aspartate and glutamate metabolism
mcht00280  Valine, leucine and isoleucine degradation
mcht00350  Tyrosine metabolism
mcht00470  D-Amino acid metabolism
mcht00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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