KEGG   PATHWAY: mebz00020
Entry
mebz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Metabacillus sp. B2-18
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mebz00020  Citrate cycle (TCA cycle)
mebz00020

Module
mebz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mebz00020]
mebz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mebz00020]
mebz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mebz00020]
mebz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mebz00020]
mebz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mebz00020]
Other DBs
GO: 0006099
Organism
Metabacillus sp. B2-18 [GN:mebz]
Gene
LPC09_18815  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
LPC09_10680  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
LPC09_18810  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LPC09_15175  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LPC09_15170  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LPC09_08800  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPC09_16855  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPC09_10090  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LPC09_10095  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LPC09_09620  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LPC09_09615  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LPC09_18575  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LPC09_18570  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LPC09_18580  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
LPC09_02610  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LPC09_21110  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LPC09_18805  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LPC09_21625  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LPC09_08925  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LPC09_19435  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LPC09_08785  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LPC09_08790  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
LPC09_08795  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mebz00010  Glycolysis / Gluconeogenesis
mebz00053  Ascorbate and aldarate metabolism
mebz00061  Fatty acid biosynthesis
mebz00071  Fatty acid degradation
mebz00190  Oxidative phosphorylation
mebz00220  Arginine biosynthesis
mebz00250  Alanine, aspartate and glutamate metabolism
mebz00280  Valine, leucine and isoleucine degradation
mebz00350  Tyrosine metabolism
mebz00470  D-Amino acid metabolism
mebz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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