KEGG   PATHWAY: meti00020
Entry
meti00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methylobacterium radiodurans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
meti00020  Citrate cycle (TCA cycle)
meti00020

Module
meti_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:meti00020]
meti_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:meti00020]
meti_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:meti00020]
meti_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:meti00020]
meti_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:meti00020]
Other DBs
GO: 0006099
Organism
Methylobacterium radiodurans [GN:meti]
Gene
DK427_05615  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DK427_18525  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DK427_02260  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DK427_01945  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DK427_01955  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
DK427_04340  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DK427_12520  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DK427_12410  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DK427_01965  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DK427_01940  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DK427_01935  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DK427_15275  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DK427_15280  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DK427_15265  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DK427_15270  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DK427_21085  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
DK427_21055  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
DK427_21060  succinate dehydrogenase [KO:K00246]
DK427_21070  succinate dehydrogenase [KO:K00247]
DK427_21075  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
DK427_03000  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DK427_01930  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DK427_19275  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
DK427_16305  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DK427_04350  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DK427_19250  transketolase [KO:K00163] [EC:1.2.4.1]
DK427_12385  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DK427_12390  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
DK427_04345  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
DK427_12405  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
meti00010  Glycolysis / Gluconeogenesis
meti00053  Ascorbate and aldarate metabolism
meti00061  Fatty acid biosynthesis
meti00071  Fatty acid degradation
meti00190  Oxidative phosphorylation
meti00220  Arginine biosynthesis
meti00250  Alanine, aspartate and glutamate metabolism
meti00280  Valine, leucine and isoleucine degradation
meti00350  Tyrosine metabolism
meti00470  D-Amino acid metabolism
meti00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system