KEGG   PATHWAY: mip00020
Entry
mip00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Microbacterium sp. PAMC 28756
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mip00020  Citrate cycle (TCA cycle)
mip00020

Module
mip_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mip00020]
mip_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mip00020]
mip_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mip00020]
mip_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mip00020]
mip_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mip00020]
Other DBs
GO: 0006099
Organism
Microbacterium sp. PAMC 28756 [GN:mip]
Gene
AXH82_12185  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AXH82_04320  citrate synthase/methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
AXH82_15365  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AXH82_11045  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AXH82_12760  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AXH82_15455  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AXH82_10990  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AXH82_10985  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AXH82_00845  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AXH82_09645  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AXH82_00850  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AXH82_00835  succinate dehydrogenase [KO:K00241]
AXH82_00840  succinate dehydrogenase [KO:K00242]
AXH82_11850  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AXH82_09170  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AXH82_02370  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AXH82_16895  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AXH82_11580  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AXH82_15610  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AXH82_15460  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mip00010  Glycolysis / Gluconeogenesis
mip00053  Ascorbate and aldarate metabolism
mip00061  Fatty acid biosynthesis
mip00071  Fatty acid degradation
mip00190  Oxidative phosphorylation
mip00220  Arginine biosynthesis
mip00250  Alanine, aspartate and glutamate metabolism
mip00280  Valine, leucine and isoleucine degradation
mip00350  Tyrosine metabolism
mip00470  D-Amino acid metabolism
mip00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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