KEGG   PATHWAY: mph00020
Entry
mph00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Microlunatus phosphovorus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mph00020  Citrate cycle (TCA cycle)
mph00020

Module
mph_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mph00020]
mph_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mph00020]
mph_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mph00020]
mph_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mph00020]
Other DBs
GO: 0006099
Organism
Microlunatus phosphovorus [GN:mph]
Gene
MLP_29200  putative acyltransferase [KO:K01647] [EC:2.3.3.1]
MLP_11950  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MLP_20350  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
MLP_22650  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MLP_12720  icd; NADP(+)-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MLP_30780  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MLP_25400  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MLP_42220  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MLP_08250  korA; 2-oxoglutarate ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MLP_08240  korB; 2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MLP_12520  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
MLP_12510  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
MLP_16560  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MLP_16570  sdhB; succinate dehydrogenase flavoprotein subunit [KO:K00240] [EC:1.3.5.1]
MLP_16550  sdhC; succinate dehydrogenase cytochrome b subunit [KO:K00241]
MLP_43720  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MLP_12700  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MLP_46180  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MLP_32660  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MLP_42230  dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mph00010  Glycolysis / Gluconeogenesis
mph00053  Ascorbate and aldarate metabolism
mph00061  Fatty acid biosynthesis
mph00071  Fatty acid degradation
mph00190  Oxidative phosphorylation
mph00220  Arginine biosynthesis
mph00250  Alanine, aspartate and glutamate metabolism
mph00280  Valine, leucine and isoleucine degradation
mph00350  Tyrosine metabolism
mph00470  D-Amino acid metabolism
mph00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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