KEGG   PATHWAY: mpha03008
Entry
mpha03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Monomorium pharaonis (pharaoh ant)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
mpha03008  Ribosome biogenesis in eukaryotes
mpha03008

Organism
Monomorium pharaonis (pharaoh ant) [GN:mpha]
Gene
105830821  casein kinase II subunit beta isoform X1 [KO:K03115]
105839240  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
105832155  nucleolar protein 6 [KO:K14544]
105828301  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
105831952  WD repeat-containing protein 43 [KO:K14546]
105831323  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
105839629  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
114253712  HEAT repeat-containing protein 1-like [KO:K14550]
105840328  WD repeat-containing protein 75 [KO:K14552]
105836169  U3 small nucleolar RNA-associated protein 18 homolog isoform X1 [KO:K14553]
105837400  WD repeat-containing protein 36 [KO:K14554]
105840125  transducin beta-like protein 3 isoform X1 [KO:K14555]
105831231  WD repeat-containing protein 3 isoform X1 [KO:K14556]
105829154  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
105833244  periodic tryptophan protein 2 homolog [KO:K14558]
105833458  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
105836610  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
105830269  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
105828325  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
105836136  nucleolar protein 56 [KO:K14564]
105836950  nucleolar protein 58 [KO:K14565]
105837492  NHP2-like protein 1 homolog [KO:K12845]
105831711  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
105835515  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
105828618  probable H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
105833388  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
105828121  rRNA-processing protein FCF1 homolog isoform X1 [KO:K14566]
105838562  U3 small nucleolar RNA-associated protein 14 homolog C [KO:K14567]
105837773  ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
105839821  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
105831018  ribosome biogenesis protein BMS1 homolog [KO:K14569]
105839626  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
105837058  RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
105838516  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
105837220  uncharacterized protein LOC105837220 isoform X1 [KO:K14523] [EC:3.1.26.5]
105831557  ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
105839409  uncharacterized protein LOC105839409 [KO:K03537] [EC:3.1.26.5]
105835875  ribonuclease P protein subunit p25-like protein isoform X2 [KO:K14525] [EC:3.1.26.5]
105834602  ribonuclease P protein subunit p20-like [KO:K14527] [EC:3.1.26.5]
105837438  ribonuclease P protein subunit p30 isoform X1 [KO:K03539] [EC:3.1.26.5]
105838896  ribonuclease P protein subunit p40 isoform X1 [KO:K14530] [EC:3.1.26.5]
105831529  uncharacterized protein LOC105831529 [KO:K14570] [EC:3.1.-.-]
105831192  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
105830606  RNA exonuclease 5 isoform X1 [KO:K14570] [EC:3.1.-.-]
105838844  probable oligoribonuclease [KO:K13288] [EC:3.1.-.-]
105838887  probable oligoribonuclease [KO:K13288] [EC:3.1.-.-]
105830537  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
105833546  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
105832068  nucleolar GTP-binding protein 1 [KO:K06943]
105838697  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
105840351  nuclear valosin-containing protein-like [KO:K14571]
105833541  midasin [KO:K14572]
105836080  RNA-binding protein 28 isoform X1 [KO:K14573]
105838902  RNA-binding protein NOB1 [KO:K11883]
105835276  uncharacterized protein LOC105835276 isoform X1 [KO:K14758] [EC:2.7.11.1]
105838998  GTP-binding nuclear protein Ran [KO:K07936]
105839696  exportin-1 [KO:K14290]
105832465  60S ribosomal export protein NMD3 [KO:K07562]
105834441  nuclear RNA export factor 1 [KO:K14284]
105835460  nuclear RNA export factor 1 [KO:K14284]
105836792  nuclear RNA export factor 1 [KO:K14284]
105836004  nuclear RNA export factor 1 [KO:K14284]
105833750  NTF2-related export protein [KO:K14285]
105834396  eukaryotic translation initiation factor 6 [KO:K03264]
105828653  ribosome maturation protein SBDS [KO:K14574]
105830673  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
105835269  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
105839038  ATPase family protein 2 homolog isoform X1 [KO:K14575]
105839160  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
105830353  serine/threonine-protein kinase RIO1-like [KO:K07178] [EC:2.7.11.1]
105835528  serine/threonine-protein kinase rio2 [KO:K07179] [EC:2.7.11.1]
114253800  5S ribosomal RNA [KO:K01981]
114253896  5S ribosomal RNA [KO:K01981]
114255548  small nucleolar RNA U3 [KO:K14483]
114255547  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
mpha03010  Ribosome
KO pathway
ko03008   
LinkDB

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