KEGG   PATHWAY: mpor00020
Entry
mpor00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Micrococcus porci
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mpor00020  Citrate cycle (TCA cycle)
mpor00020

Module
mpor_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mpor00020]
mpor_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mpor00020]
mpor_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mpor00020]
mpor_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mpor00020]
mpor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mpor00020]
Other DBs
GO: 0006099
Organism
Micrococcus porci [GN:mpor]
Gene
KW076_06325  citrate synthase [KO:K01647] [EC:2.3.3.1]
KW076_06995  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01659] [EC:2.3.3.5]
KW076_07510  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
KW076_12135  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KW076_10405  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
KW076_07355  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KW076_12270  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KW076_12275  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KW076_06050  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
KW076_11990  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KW076_11995  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KW076_11980  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KW076_11985  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
KW076_11820  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KW076_01495  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KW076_10055  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KW076_07105  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KW076_00175  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KW076_09635  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KW076_07350  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mpor00010  Glycolysis / Gluconeogenesis
mpor00053  Ascorbate and aldarate metabolism
mpor00061  Fatty acid biosynthesis
mpor00071  Fatty acid degradation
mpor00190  Oxidative phosphorylation
mpor00220  Arginine biosynthesis
mpor00250  Alanine, aspartate and glutamate metabolism
mpor00280  Valine, leucine and isoleucine degradation
mpor00350  Tyrosine metabolism
mpor00470  D-Amino acid metabolism
mpor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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