KEGG   PATHWAY: msak00020
Entry
msak00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium saskatchewanense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msak00020  Citrate cycle (TCA cycle)
msak00020

Module
msak_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:msak00020]
msak_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:msak00020]
msak_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:msak00020]
msak_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:msak00020]
msak_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msak00020]
Other DBs
GO: 0006099
Organism
Mycobacterium saskatchewanense [GN:msak]
Gene
MSAS_25230  gltA2; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
MSAS_25260  citA; putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MSAS_21770  gltA1; citrate synthase [KO:K01659] [EC:2.3.3.5]
MSAS_02430  acn; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MSAS_47040  icd2; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MSAS_47050  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MSAS_43410  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MSAS_20450  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MSAS_41860  lpdC; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MSAS_16660  2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MSAS_16650  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MSAS_24390  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MSAS_24400  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MSAS_47170  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MSAS_38390  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MSAS_47160  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MSAS_38380  fumarate reductase [KO:K00240] [EC:1.3.5.1]
MSAS_47190  sdhC; succinate dehydrogenase 2 membrane subunit SdhC [KO:K00241]
MSAS_47180  sdhD; succinate dehydrogenase [KO:K00242]
MSAS_22290  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MSAS_20490  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MSAS_54610  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MSAS_21760  hypothetical protein [KO:K01958] [EC:6.4.1.1]
MSAS_37770  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MSAS_12150  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MSAS_17160  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MSAS_43510  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MSAS_49770  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MSAS_49760  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MSAS_49750  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MSAS_11670  sucB; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msak00010  Glycolysis / Gluconeogenesis
msak00053  Ascorbate and aldarate metabolism
msak00061  Fatty acid biosynthesis
msak00071  Fatty acid degradation
msak00190  Oxidative phosphorylation
msak00220  Arginine biosynthesis
msak00250  Alanine, aspartate and glutamate metabolism
msak00280  Valine, leucine and isoleucine degradation
msak00350  Tyrosine metabolism
msak00470  D-Amino acid metabolism
msak00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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