KEGG   PATHWAY: msan00020
Entry
msan00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Marinobacter salinisoli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msan00020  Citrate cycle (TCA cycle)
msan00020

Module
msan_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:msan00020]
msan_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:msan00020]
msan_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:msan00020]
msan_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msan00020]
Other DBs
GO: 0006099
Organism
Marinobacter salinisoli [GN:msan]
Gene
LPB19_12760  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
LPB19_10620  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
LPB19_02640  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
LPB19_09695  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LPB19_04285  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LPB19_12735  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LPB19_12730  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LPB19_01895  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPB19_12725  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPB19_12715  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LPB19_12720  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LPB19_12745  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LPB19_12740  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LPB19_12755  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LPB19_12750  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LPB19_09275  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LPB19_01500  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LPB19_05200  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LPB19_12025  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LPB19_01450  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LPB19_02945  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LPB19_00960  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LPB19_07640  alpha/beta hydrolase [KO:K00627] [EC:2.3.1.12]
LPB19_00955  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msan00010  Glycolysis / Gluconeogenesis
msan00053  Ascorbate and aldarate metabolism
msan00061  Fatty acid biosynthesis
msan00071  Fatty acid degradation
msan00190  Oxidative phosphorylation
msan00220  Arginine biosynthesis
msan00250  Alanine, aspartate and glutamate metabolism
msan00280  Valine, leucine and isoleucine degradation
msan00350  Tyrosine metabolism
msan00470  D-Amino acid metabolism
msan00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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