KEGG   PATHWAY: msem00020
Entry
msem00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Metabacillus sediminilitoris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msem00020  Citrate cycle (TCA cycle)
msem00020

Module
msem_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:msem00020]
msem_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:msem00020]
msem_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:msem00020]
msem_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:msem00020]
msem_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msem00020]
Other DBs
GO: 0006099
Organism
Metabacillus sediminilitoris [GN:msem]
Gene
GMB29_20860  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
GMB29_13990  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GMB29_20855  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GMB29_15760  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GMB29_05645  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GMB29_15755  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GMB29_05650  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GMB29_18230  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GMB29_18995  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GMB29_06090  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GMB29_07590  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GMB29_10955  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GMB29_17015  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GMB29_17010  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GMB29_17480  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GMB29_17485  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GMB29_20620  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GMB29_20615  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GMB29_20625  succinate dehydrogenase [KO:K00241]
GMB29_02395  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GMB29_23310  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GMB29_20850  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GMB29_09180  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
GMB29_10700  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
GMB29_18130  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GMB29_21465  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GMB29_10695  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GMB29_18245  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GMB29_18240  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
GMB29_18235  biotin/lipoyl-binding protein [KO:K00627] [EC:2.3.1.12]
GMB29_07585  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
GMB29_10970  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msem00010  Glycolysis / Gluconeogenesis
msem00053  Ascorbate and aldarate metabolism
msem00061  Fatty acid biosynthesis
msem00071  Fatty acid degradation
msem00190  Oxidative phosphorylation
msem00220  Arginine biosynthesis
msem00250  Alanine, aspartate and glutamate metabolism
msem00280  Valine, leucine and isoleucine degradation
msem00350  Tyrosine metabolism
msem00470  D-Amino acid metabolism
msem00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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