KEGG   PATHWAY: mti00020
Entry
mti00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis RGTB423
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mti00020  Citrate cycle (TCA cycle)
mti00020

Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis RGTB423 [GN:mti]
Gene
MRGA423_05620  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
MRGA423_07065  citrate synthase [KO:K01647] [EC:2.3.3.1]
MRGA423_00425  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MRGA423_07780  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MRGA423_15295  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MRGA423_05965  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
MRGA423_05960  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
MRGA423_01595  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MRGA423_20855  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MRGA423_01590  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MRGA423_20845  succinate dehydrogenase cytochrome B-556 subunit sdhC [KO:K00241]
MRGA423_20850  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
MRGA423_09710  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
MRGA423_09715  fumarate reductase iron-sulfur subunit FrdB/membrane anchor subunit FrdC [KO:K00245] [EC:1.3.5.1]
MRGA423_09720  fumarate reductase iron-sulfur subunit FrdB/membrane anchor subunit FrdC [KO:K00246]
MRGA423_09725  fumarate reductase subunit D [KO:K00247]
MRGA423_06875  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MRGA423_07730  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MRGA423_17665  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MRGA423_18435  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MRGA423_13960  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mti00010  Glycolysis / Gluconeogenesis
mti00053  Ascorbate and aldarate metabolism
mti00061  Fatty acid biosynthesis
mti00071  Fatty acid degradation
mti00190  Oxidative phosphorylation
mti00220  Arginine biosynthesis
mti00250  Alanine, aspartate and glutamate metabolism
mti00280  Valine, leucine and isoleucine degradation
mti00350  Tyrosine metabolism
mti00470  D-Amino acid metabolism
mti00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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