KEGG   PATHWAY: mtj00020
Entry
mtj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis Beijing/NITR203
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtj00020  Citrate cycle (TCA cycle)
mtj00020

Module
mtj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mtj00020]
mtj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mtj00020]
mtj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mtj00020]
mtj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mtj00020]
mtj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtj00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis Beijing/NITR203 [GN:mtj]
Gene
J112_04790  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
J112_04835  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
J112_06100  citrate synthase [KO:K01659] [EC:2.3.3.5]
J112_07925  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
J112_17945  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J112_00355  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J112_06720  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
J112_02460  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
J112_13175  oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
J112_13170  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
J112_05140  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
J112_05135  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
J112_01345  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J112_17830  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J112_01340  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
J112_17835  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
J112_17820  succinate dehydrogenase cytochrome B-556 subunit sdhC [KO:K00241]
J112_17825  succinate dehydrogenase [KO:K00242]
J112_08340  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
J112_08345  fumarate reductase iron-sulfur subunit FrdB/membrane anchor subunit FrdC [KO:K00245] [EC:1.3.5.1]
J112_08350  fumarate reductase iron-sulfur subunit FrdB/membrane anchor subunit FrdC [KO:K00246]
J112_08355  fumarate reductase subunit D [KO:K00247]
J112_05930  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J112_06680  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J112_15270  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
J112_15885  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
J112_01155  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
J112_12035  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
J112_11875  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtj00010  Glycolysis / Gluconeogenesis
mtj00053  Ascorbate and aldarate metabolism
mtj00061  Fatty acid biosynthesis
mtj00071  Fatty acid degradation
mtj00190  Oxidative phosphorylation
mtj00220  Arginine biosynthesis
mtj00250  Alanine, aspartate and glutamate metabolism
mtj00280  Valine, leucine and isoleucine degradation
mtj00350  Tyrosine metabolism
mtj00470  D-Amino acid metabolism
mtj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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