KEGG   PATHWAY: mtr00240
Entry
mtr00240                    Pathway                                
Name
Pyrimidine metabolism - Medicago truncatula (barrel medic)
Class
Metabolism; Nucleotide metabolism
Pathway map
mtr00240  Pyrimidine metabolism
mtr00240

Module
mtr_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:mtr00240]
mtr_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:mtr00240]
mtr_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:mtr00240]
mtr_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:mtr00240]
Other DBs
GO: 0006220 0006213
Organism
Medicago truncatula (barrel medic) [GN:mtr]
Gene
11418051  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
11424976  carbamoyl-phosphate synthase small chain, chloroplastic [KO:K01956] [EC:6.3.5.5]
11407155  carbamoyl-phosphate synthase small chain, chloroplastic [KO:K01956] [EC:6.3.5.5]
11437903  aspartate carbamoyltransferase 2, chloroplastic isoform X3 [KO:K00609] [EC:2.1.3.2]
11426800  aspartate carbamoyltransferase 1, chloroplastic [KO:K00609] [EC:2.1.3.2]
11444984  dihydroorotase, mitochondrial [KO:K01465] [EC:3.5.2.3]
11421923  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
11441435  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
11434799  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
11414291  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
11425503  UMP-CMP kinase 3 [KO:K13800] [EC:2.7.4.14]
25491834  UMP-CMP kinase isoform X1 [KO:K13800] [EC:2.7.4.14]
11405787  UMP-CMP kinase [KO:K13800] [EC:2.7.4.14]
11437214  uridylate kinase [KO:K09903] [EC:2.7.4.22]
25500090  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
11407961  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
11413244  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
112416222  nucleoside-triphosphatase-like [KO:K14641] [EC:3.6.1.5]
25495872  apyrase 2 [KO:K14641] [EC:3.6.1.5]
11443103  apyrase 2 [KO:K14641] [EC:3.6.1.5]
11441027  nucleoside-triphosphatase [KO:K14641] [EC:3.6.1.5]
11441028  nucleoside-triphosphatase isoform X1 [KO:K14641] [EC:3.6.1.5]
11436281  nucleoside-triphosphatase [KO:K14641] [EC:3.6.1.5]
11436512  venom phosphodiesterase 2 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
11439434  ectonucleotide pyrophosphatase/phosphodiesterase family member 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
11419267  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
11423868  CTP synthase [KO:K01937] [EC:6.3.4.2]
11444287  CTP synthase [KO:K01937] [EC:6.3.4.2]
25502430  CTP synthase [KO:K01937] [EC:6.3.4.2]
11419996  CTP synthase [KO:K01937] [EC:6.3.4.2]
11444865  uridine kinase-like protein 4 [KO:K00876] [EC:2.7.1.48]
11407137  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
25501494  inorganic pyrophosphatase TTM2 [KO:K00876] [EC:2.7.1.48]
25497859  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
11446601  inorganic pyrophosphatase TTM1 isoform X1 [KO:K00876] [EC:2.7.1.48]
25492797  inorganic pyrophosphatase TTM2 isoform X1 [KO:K00876] [EC:2.7.1.48]
11433705  uridine kinase-like protein 4 [KO:K00876] [EC:2.7.1.48]
11416863  uridine kinase-like protein 5 [KO:K00876] [EC:2.7.1.48]
11417330  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
11425771  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
11438663  uncharacterized protein LOC11438663 isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
11439598  5'-nucleotidase SurE isoform X2 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
11430380  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
11428555  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
11434767  uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
25491555  uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
11424519  pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
11415179  7-methylguanosine phosphate-specific 5'-nucleotidase [KO:K24242] [EC:3.1.3.91]
11428999  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
11430168  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
11438405  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
25488510  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
25502786  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
25480771  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
25497818  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
25494012  ribonucleoside-diphosphate reductase small chain A [KO:K10808] [EC:1.17.4.1]
25483253  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
11431912  dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
25480606  5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
25494275  5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
25494276  5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
11409501  deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
25480774  thymidylate kinase [KO:K00943] [EC:2.7.4.9]
11405368  thymidylate kinase-like [KO:K00943] [EC:2.7.4.9]
25489181  deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
11436557  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
112418988  thymidine kinase a-like [KO:K00857] [EC:2.7.1.21]
11415341  bifunctional dihydrofolate reductase-thymidylate synthase isoform X1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
25495385  bifunctional dihydrofolate reductase-thymidylate synthase isoform X1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
11440565  bifunctional dihydrofolate reductase-thymidylate synthase [KO:K13998] [EC:1.5.1.3 2.1.1.45]
11414639  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
11421464  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
11434280  dihydropyrimidinase isoform X1 [KO:K01464] [EC:3.5.2.2]
11411828  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
11406828  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
mtr00030  Pentose phosphate pathway
mtr00220  Arginine biosynthesis
mtr00250  Alanine, aspartate and glutamate metabolism
mtr00280  Valine, leucine and isoleucine degradation
mtr00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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