KEGG   PATHWAY: mtun00020
Entry
mtun00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methylocella tundrae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtun00020  Citrate cycle (TCA cycle)
mtun00020

Module
mtun_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mtun00020]
mtun_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mtun00020]
mtun_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mtun00020]
mtun_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mtun00020]
mtun_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtun00020]
Other DBs
GO: 0006099
Organism
Methylocella tundrae [GN:mtun]
Gene
MTUNDRAET4_3453  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MTUNDRAET4_1790  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
MTUNDRAET4_1768  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MTUNDRAET4_2955  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
MTUNDRAET4_2956  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
MTUNDRAET4_1112  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MTUNDRAET4_2957  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MTUNDRAET4_2954  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
MTUNDRAET4_2953  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
MTUNDRAET4_3175  Succinyl-CoA:acetate CoA-transferase [KO:K18118] [EC:2.8.3.18]
MTUNDRAET4_1716  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MTUNDRAET4_1717  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
MTUNDRAET4_1714  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
MTUNDRAET4_1715  sdhD; Succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
MTUNDRAET4_0163.1  fumC; fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
MTUNDRAET4_2952  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MTUNDRAET4_3987  pyc; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MTUNDRAET4_2121  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MTUNDRAET4_0133.1  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MTUNDRAET4_1109  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MTUNDRAET4_4241  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MTUNDRAET4_1110  pdhB; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MTUNDRAET4_1111  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MTUNDRAET4_1884  acoC; Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system [KO:K00627] [EC:2.3.1.12]
MTUNDRAET4_4243  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MTUNDRAET4_4087  ydbK; putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtun00010  Glycolysis / Gluconeogenesis
mtun00053  Ascorbate and aldarate metabolism
mtun00061  Fatty acid biosynthesis
mtun00071  Fatty acid degradation
mtun00190  Oxidative phosphorylation
mtun00220  Arginine biosynthesis
mtun00250  Alanine, aspartate and glutamate metabolism
mtun00280  Valine, leucine and isoleucine degradation
mtun00350  Tyrosine metabolism
mtun00470  D-Amino acid metabolism
mtun00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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