KEGG   PATHWAY: nmg00630
Entry
nmg00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Natrialba magadii
Class
Metabolism; Carbohydrate metabolism
Pathway map
nmg00630  Glyoxylate and dicarboxylate metabolism
nmg00630

Module
nmg_M00012  Glyoxylate cycle [PATH:nmg00630]
nmg_M00621  Glycine cleavage system [PATH:nmg00630]
nmg_M00740  Methylaspartate cycle [PATH:nmg00630]
nmg_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:nmg00630]
nmg_M00968  Pentose bisphosphate pathway (nucleoside degradation), archaea, nucleoside/NMP => 3-PGA/glycerone phosphate [PATH:nmg00630]
Other DBs
GO: 0046487 0043648
Organism
Natrialba magadii [GN:nmg]
Gene
Nmag_3362  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Nmag_3167  acs4; acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
Nmag_3169  acs5; acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
Nmag_0837  acs7; acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
Nmag_2583  acs1; acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
Nmag_1974  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Nmag_1476  citZ1; citrate synthase [KO:K01647] [EC:2.3.3.1]
Nmag_2423  citZ2; citrate synthase [KO:K01647] [EC:2.3.3.1]
Nmag_2420  citZ3; citrate synthase [KO:K01647] [EC:2.3.3.1]
Nmag_1336  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Nmag_2989  citB2; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Nmag_4020  acaB5; acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
Nmag_0596  acaB4; acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
Nmag_3319  acaB6; acetyl-CoA C-acetyltransferase catalytic subunit [KO:K00626] [EC:2.3.1.9]
Nmag_2477  acaB1; acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Nmag_3409  acaB2; acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
Nmag_3931  uncharacterized protein [KO:K00626] [EC:2.3.1.9]
Nmag_0555  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
Nmag_3337  msh; mesaconyl-CoA hydratase [KO:K14449] [EC:4.2.1.148]
Nmag_3094  pccA2; propionyl-CoA carboxylase biotin carboxylase component [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
Nmag_2123  pccA1; propionyl-CoA carboxylase biotin carboxylase component [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
Nmag_4033  pccA3; propionyl-CoA carboxylase biotin carboxylase component [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
Nmag_3092  pccB2; propionyl-CoA carboxylase carboxyltransferase component [KO:K19312] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
Nmag_3093  uncharacterized protein [KO:K22568] [EC:6.4.1.2 6.4.1.3]
Nmag_2472  mmcB; methylmalonyl-CoA mutase subunit B (cobalamin-binding subunit) [KO:K01849] [EC:5.4.99.2]
Nmag_0558  mmcA2; methylmalonyl-CoA mutase subunit A [KO:K01848] [EC:5.4.99.2]
Nmag_0817  mmcA1; methylmalonyl-CoA mutase subunit A [KO:K01848] [EC:5.4.99.2]
Nmag_3335  mamB; methylaspartate mutase large subunit [KO:K19268] [EC:5.4.99.1]
Nmag_3334  mamA; methylaspartate mutase small subunit [KO:K01846] [EC:5.4.99.1]
Nmag_3336  mal; methylaspartate ammonia-lyase [KO:K04835] [EC:4.3.1.2]
Nmag_3333  mct; succinyl-CoA:mesaconate CoA-transferase [KO:K19280] [EC:2.8.3.26]
Nmag_3338  mcl; beta-methylmalyl-CoA lyase [KO:K19281] [EC:4.1.3.24]
Nmag_3363  aceB; malate synthase [KO:K19282] [EC:4.1.3.24 3.1.2.30]
Nmag_3391  katE; catalase [KO:K03781] [EC:1.11.1.6]
Nmag_1216  HAD superfamily hydrolase [KO:K01091] [EC:3.1.3.18]
Nmag_1165  HAD superfamily hydrolase [KO:K01091] [EC:3.1.3.18]
Nmag_1973  HAD superfamily hydrolase [KO:K01091] [EC:3.1.3.18]
Nmag_0938  phosphoglycolate phosphatase [KO:K22223] [EC:3.1.3.18]
Nmag_0732  rbcL; ribulose-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
Nmag_0019  aminotransferase class V (serine--pyruvate aminotransferase / alanine--glyoxylate aminotransferase) [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Nmag_2529  gltB; glutamate synthase large subunit [KO:K00284] [EC:1.4.7.1]
Nmag_1459  glnA2; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Nmag_3382  glnA1; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Nmag_3850  glnA3; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Nmag_3857  glnA4; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Nmag_4121  glnA5; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Nmag_3305  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Nmag_0397  gcvP1; glycine cleavage system protein P alpha subunit [KO:K00282] [EC:1.4.4.2]
Nmag_0396  gcvP2; glycine cleavage system protein P beta subunit [KO:K00283] [EC:1.4.4.2]
Nmag_1501  homolog to glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
Nmag_0716  gcvT1; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
Nmag_1665  lpdA1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Nmag_0717  gcvH; glycine cleavage system protein H [KO:K02437]
Nmag_0806  DUF4147 domain protein [KO:K11529] [EC:2.7.1.165]
Nmag_3814  gldA2; glycerol dehydrogenase [KO:K26209] [EC:1.1.1.-]
Nmag_1147  kdgA; 2-dehydro-3-deoxy-phosphogluconate aldolase, bacterial-type [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Nmag_2645  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
nmg00010  Glycolysis / Gluconeogenesis
nmg00020  Citrate cycle (TCA cycle)
nmg00030  Pentose phosphate pathway
nmg00053  Ascorbate and aldarate metabolism
nmg00071  Fatty acid degradation
nmg00230  Purine metabolism
nmg00250  Alanine, aspartate and glutamate metabolism
nmg00260  Glycine, serine and threonine metabolism
nmg00620  Pyruvate metabolism
nmg00710  Carbon fixation by Calvin cycle
nmg00750  Vitamin B6 metabolism
nmg00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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