KEGG   PATHWAY: nmk00020
Entry
nmk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neobacillus mesonae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nmk00020  Citrate cycle (TCA cycle)
nmk00020

Module
nmk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nmk00020]
nmk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nmk00020]
nmk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nmk00020]
nmk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nmk00020]
nmk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nmk00020]
Other DBs
GO: 0006099
Organism
Neobacillus mesonae [GN:nmk]
Gene
CHR53_21235  citrate synthase [KO:K01659] [EC:2.3.3.5]
CHR53_12790  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CHR53_21230  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CHR53_18005  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CHR53_18000  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CHR53_08905  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHR53_13925  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHR53_16485  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHR53_19420  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHR53_09920  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CHR53_09925  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CHR53_09620  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CHR53_14030  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CHR53_09615  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CHR53_14035  succinate--CoA ligase [KO:K01903] [EC:6.2.1.5]
CHR53_03170  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
CHR53_20985  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CHR53_20980  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CHR53_20990  succinate dehydrogenase [KO:K00241]
CHR53_06200  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CHR53_07745  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CHR53_16725  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CHR53_16845  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CHR53_21225  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CHR53_27790  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CHR53_09020  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CHR53_21705  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CHR53_08890  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CHR53_08895  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CHR53_08900  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
CHR53_13930  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
CHR53_08635  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
CHR53_08630  ferredoxin [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nmk00010  Glycolysis / Gluconeogenesis
nmk00053  Ascorbate and aldarate metabolism
nmk00061  Fatty acid biosynthesis
nmk00071  Fatty acid degradation
nmk00190  Oxidative phosphorylation
nmk00220  Arginine biosynthesis
nmk00250  Alanine, aspartate and glutamate metabolism
nmk00280  Valine, leucine and isoleucine degradation
nmk00350  Tyrosine metabolism
nmk00470  D-Amino acid metabolism
nmk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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