KEGG   PATHWAY: ocu00020
Entry
ocu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Oryctolagus cuniculus (rabbit)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ocu00020  Citrate cycle (TCA cycle)
ocu00020

Module
ocu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ocu00020]
ocu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ocu00020]
ocu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ocu00020]
ocu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ocu00020]
ocu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ocu00020]
Other DBs
GO: 0006099
Organism
Oryctolagus cuniculus (rabbit) [GN:ocu]
Gene
100327271  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
127487388  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
100346747  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
127489013  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
100352714  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
100009154  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
100340796  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
100328559  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
100338100  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
100328743  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
100342113  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
103351073  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
100346560  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
100359048  2-oxoglutarate dehydrogenase complex component E1 isoform X3 [KO:K00164] [EC:1.2.4.2]
127484180  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
100340017  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
100345929  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
100358789  LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
100351138  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
100356400  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100341093  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100328584  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
100328585  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
103350026  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
100346169  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
108175360  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
100341256  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
100353481  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
100357596  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
100354715  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
100341412  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
100354776  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
103346574  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
100144341  phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
100350273  pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
100357349  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
100356560  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
100349212  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ocu00010  Glycolysis / Gluconeogenesis
ocu00053  Ascorbate and aldarate metabolism
ocu00061  Fatty acid biosynthesis
ocu00062  Fatty acid elongation
ocu00071  Fatty acid degradation
ocu00190  Oxidative phosphorylation
ocu00220  Arginine biosynthesis
ocu00250  Alanine, aspartate and glutamate metabolism
ocu00280  Valine, leucine and isoleucine degradation
ocu00350  Tyrosine metabolism
ocu00470  D-Amino acid metabolism
ocu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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