KEGG   PATHWAY: opi04710
Entry
opi04710                    Pathway                                
Name
Circadian rhythm - Ochotona princeps (American pika)
Description
Circadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of cell-autonomous transcription-translation feedback loops that drive rhythmic, 24-hour expression patterns of core clock components. The first negative feedback loop is a rhythmic transcription of period genes (PER1, PER2, and PER3) and chryptochrome genes (CRY1 and CRY2). PER and CRY proteins form a heterodimer, which acts on the CLOCK/BMAL1 heterodimer to repress its own transcription. PER and CRY proteins are phosphorylated by casein kinase epsilon (CKIepsilon), which leads to degradation and restarting of the cycle. The second loop is a positive feedback loop driven by the CLOCK/BMAL1 heterodimer, which initiates transcription of target genes containing E-box cis-regulatory enhancer sequences.
Class
Organismal Systems; Environmental adaptation
Pathway map
opi04710  Circadian rhythm
opi04710

Other DBs
GO: 0007623
Organism
Ochotona princeps (American pika) [GN:opi]
Gene
101526449  RORA; nuclear receptor ROR-alpha [KO:K08532]
101534646  RORB; nuclear receptor ROR-beta isoform X1 [KO:K08533]
101535121  RORC; nuclear receptor ROR-gamma [KO:K08534]
101530391  NR1D1; nuclear receptor subfamily 1 group D member 1 [KO:K03728]
101520103  NR1D2; nuclear receptor subfamily 1 group D member 2 [KO:K08531]
101521051  NFIL3; nuclear factor interleukin-3-regulated protein [KO:K09059]
101523710  ARNTL; aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1 [KO:K02296]
101535074  D site-binding protein [KO:K09056]
101525094  BHLHE40; class E basic helix-loop-helix protein 40 [KO:K03729]
101525853  BHLHE41; class E basic helix-loop-helix protein 41 [KO:K03730]
101535060  CSNK1D; casein kinase I isoform X1 [KO:K08959] [EC:2.7.11.1]
101525679  CSNK1E; casein kinase I isoform X1 [KO:K08960] [EC:2.7.11.1]
101524039  PER1; period circadian protein homolog 1 isoform X1 [KO:K21944]
101516229  PER2; LOW QUALITY PROTEIN: period circadian protein homolog 2 [KO:K02633]
101533736  CRY2; cryptochrome-2 [KO:K02295]
101520352  CRY1; cryptochrome-1 [KO:K02295]
101536193  CLOCK; circadian locomoter output cycles protein kaput [KO:K02223] [EC:2.3.1.48]
101520937  NPAS2; neuronal PAS domain-containing protein 2 [KO:K09026]
101532574  CREB1; cyclic AMP-responsive element-binding protein 1 isoform X1 [KO:K05870]
101536083  PRKAA1; 5'-AMP-activated protein kinase catalytic subunit alpha-1 isoform X1 [KO:K07198] [EC:2.7.11.31]
101525509  serine/threonine protein kinase OSK1-like [KO:K07198] [EC:2.7.11.31]
101529543  PRKAA2; 5'-AMP-activated protein kinase catalytic subunit alpha-2 [KO:K07198] [EC:2.7.11.31]
101520164  PRKAB2; 5'-AMP-activated protein kinase subunit beta-2 isoform X1 [KO:K07199]
101524207  PRKAB1; 5'-AMP-activated protein kinase subunit beta-1 [KO:K07199]
101526129  PRKAG1; 5'-AMP-activated protein kinase subunit gamma-1 isoform X1 [KO:K07200]
101530247  PRKAG3; 5'-AMP-activated protein kinase subunit gamma-3 [KO:K07200]
101535143  PRKAG2; 5'-AMP-activated protein kinase subunit gamma-2 isoform X1 [KO:K07200]
101519048  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
101529995  CUL1; cullin-1 [KO:K03347]
101526971  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
101532378  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
101534601  BTRC; F-box/WD repeat-containing protein 1A [KO:K03362]
101522763  FBXL3; F-box/LRR-repeat protein 3 isoform X1 [KO:K10269]
Compound
C00076  Calcium cation
C00575  3',5'-Cyclic AMP
Reference
  Authors
Takahashi JS
  Title
Transcriptional architecture of the mammalian circadian clock.
  Journal
Nat Rev Genet 18:164-179 (2017)
DOI:10.1038/nrg.2016.150
Reference
  Authors
Wang S, Li F, Lin Y, Wu B
  Title
Targeting REV-ERBalpha for therapeutic purposes: promises and challenges.
  Journal
Theranostics 10:4168-4182 (2020)
DOI:10.7150/thno.43834
Reference
  Authors
Panda S, Hogenesch JB, Kay SA.
  Title
Circadian rhythms from flies to human.
  Journal
Nature 417:329-35 (2002)
DOI:10.1038/417329a
Reference
  Authors
Honma S, Kawamoto T, Takagi Y, Fujimoto K, Sato F, Noshiro M, Kato Y, Honma K.
  Title
Dec1 and Dec2 are regulators of the mammalian molecular clock.
  Journal
Nature 419:841-4 (2002)
DOI:10.1038/nature01123
Reference
  Authors
Fu L, Lee CC.
  Title
The circadian clock: pacemaker and tumour suppressor.
  Journal
Nat Rev Cancer 3:350-61 (2003)
DOI:10.1038/nrc1072
Reference
  Authors
Schibler U, Sassone-Corsi P.
  Title
A web of circadian pacemakers.
  Journal
Cell 111:919-22 (2002)
DOI:10.1016/S0092-8674(02)01225-4
Reference
  Authors
Takahashi JS, Hong HK, Ko CH, McDearmon EL
  Title
The genetics of mammalian circadian order and disorder: implications for physiology and disease.
  Journal
Nat Rev Genet 9:764-75 (2008)
DOI:10.1038/nrg2430
Related
pathway
opi04010  MAPK signaling pathway
opi04120  Ubiquitin mediated proteolysis
opi04713  Circadian entrainment
KO pathway
ko04710   
LinkDB

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