KEGG   PATHWAY: pabs00630
Entry
pabs00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Polycladomyces abyssicola
Class
Metabolism; Carbohydrate metabolism
Pathway map
pabs00630  Glyoxylate and dicarboxylate metabolism
pabs00630

Module
pabs_M00012  Glyoxylate cycle [PATH:pabs00630]
pabs_M00621  Glycine cleavage system [PATH:pabs00630]
Other DBs
GO: 0046487 0043648
Organism
Polycladomyces abyssicola [GN:pabs]
Gene
JIR001_04910  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
JIR001_18820  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
JIR001_23830  acsA_1; acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
JIR001_24590  acsA_2; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
JIR001_05250  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
JIR001_13170  malate synthase [KO:K01638] [EC:2.3.3.9]
JIR001_04900  malate synthase [KO:K01638] [EC:2.3.3.9]
JIR001_08440  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JIR001_24260  hypothetical protein [KO:K01647] [EC:2.3.3.1]
JIR001_08420  citZ; citrate synthase 2 [KO:K01659] [EC:2.3.3.5]
JIR001_05010  citB; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
JIR001_30850  mmgA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
JIR001_08470  enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
JIR001_14130  mceE; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
JIR001_14140  propionyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
JIR001_14120  methylmalonyl-CoA mutase [KO:K01849] [EC:5.4.99.2]
JIR001_14110  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
JIR001_13160  hypothetical protein [KO:K00104] [EC:1.1.99.14]
JIR001_31420  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
JIR001_13150  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
JIR001_31410  glcF; putative glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
JIR001_13620  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
JIR001_23140  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
JIR001_01360  pfs; MTA/SAH nucleosidase [KO:K01091] [EC:3.1.3.18]
JIR001_17620  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JIR001_31100  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JIR001_30520  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
JIR001_11900  gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 [KO:K00282] [EC:1.4.4.2]
JIR001_11910  gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 [KO:K00283] [EC:1.4.4.2]
JIR001_11890  gcvT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
JIR001_14040  bfmBC; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JIR001_04620  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JIR001_04350  gcvH; glycine cleavage system H protein [KO:K02437]
JIR001_18840  glycerate kinase [KO:K00865] [EC:2.7.1.165]
JIR001_13560  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
JIR001_19980  yjgC; putative oxidoreductase YjgC [KO:K00123] [EC:1.17.1.9]
JIR001_09700  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
JIR001_28920  cyclase [KO:K07130] [EC:3.5.1.9]
JIR001_07290  kynB; kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pabs00010  Glycolysis / Gluconeogenesis
pabs00020  Citrate cycle (TCA cycle)
pabs00030  Pentose phosphate pathway
pabs00053  Ascorbate and aldarate metabolism
pabs00071  Fatty acid degradation
pabs00230  Purine metabolism
pabs00250  Alanine, aspartate and glutamate metabolism
pabs00260  Glycine, serine and threonine metabolism
pabs00620  Pyruvate metabolism
pabs00710  Carbon fixation by Calvin cycle
pabs00750  Vitamin B6 metabolism
pabs00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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