KEGG   PATHWAY: paej00020
Entry
paej00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus sp. FSL H7-0737
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
paej00020  Citrate cycle (TCA cycle)
paej00020

Module
paej_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:paej00020]
paej_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:paej00020]
paej_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:paej00020]
paej_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:paej00020]
Other DBs
GO: 0006099
Organism
Paenibacillus sp. FSL H7-0737 [GN:paej]
Gene
H70737_09195  citrate synthase [KO:K01659] [EC:2.3.3.5]
H70737_03070  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
H70737_09200  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H70737_01880  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
H70737_01875  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
H70737_21750  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
H70737_16675  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
H70737_03875  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
H70737_18880  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
H70737_18885  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
H70737_25380  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
H70737_25375  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
H70737_25385  succinate dehydrogenase [KO:K00241]
H70737_09225  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
H70737_09205  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H70737_13630  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
H70737_16690  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
H70737_16685  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
H70737_16680  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
H70737_17170  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
H70737_17175  ferredoxin [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
paej00010  Glycolysis / Gluconeogenesis
paej00053  Ascorbate and aldarate metabolism
paej00061  Fatty acid biosynthesis
paej00071  Fatty acid degradation
paej00190  Oxidative phosphorylation
paej00220  Arginine biosynthesis
paej00250  Alanine, aspartate and glutamate metabolism
paej00280  Valine, leucine and isoleucine degradation
paej00350  Tyrosine metabolism
paej00470  D-Amino acid metabolism
paej00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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