KEGG   PATHWAY: paex00630
Entry
paex00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paracoccus aestuarii
Class
Metabolism; Carbohydrate metabolism
Pathway map
paex00630  Glyoxylate and dicarboxylate metabolism
paex00630

Module
paex_M00373  Ethylmalonyl pathway [PATH:paex00630]
paex_M00621  Glycine cleavage system [PATH:paex00630]
paex_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:paex00630]
Other DBs
GO: 0046487 0043648
Organism
Paracoccus aestuarii [GN:paex]
Gene
JHW48_08170  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
JHW48_10105  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
JHW48_11990  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
JHW48_17120  malate synthase G [KO:K01638] [EC:2.3.3.9]
JHW48_10995  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JHW48_02615  citrate synthase [KO:K01647] [EC:2.3.3.1]
JHW48_05395  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JHW48_01405  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
JHW48_04725  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JHW48_11420  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JHW48_12015  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JHW48_13525  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JHW48_14040  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
JHW48_15130  bktB; beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
JHW48_13530  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
JHW48_08535  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
JHW48_12345  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
JHW48_12525  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
JHW48_12340  protein meaA [KO:K14447] [EC:5.4.99.63]
JHW48_13610  acyl-CoA dehydrogenase family protein [KO:K14448] [EC:1.3.8.12]
JHW48_10970  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
JHW48_04005  L-malyl-CoA/beta-methylmalyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
JHW48_10985  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
JHW48_08440  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
JHW48_08465  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
JHW48_17825  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
JHW48_08410  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
JHW48_11200  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
JHW48_11195  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
JHW48_11190  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
JHW48_02865  catalase [KO:K03781] [EC:1.11.1.6]
JHW48_06285  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
JHW48_02830  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
JHW48_11925  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
JHW48_03640  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
JHW48_06420  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
JHW48_08985  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
JHW48_13235  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
JHW48_04030  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JHW48_10165  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
JHW48_11345  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JHW48_10080  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
JHW48_15350  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
JHW48_15360  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
JHW48_06445  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHW48_11035  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHW48_17260  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHW48_15355  gcvH; glycine cleavage system protein GcvH [KO:K02437]
JHW48_11155  glycerate kinase [KO:K11529] [EC:2.7.1.165]
JHW48_16945  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
JHW48_11275  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
JHW48_08000  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
JHW48_07990  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
JHW48_17670  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
JHW48_07985  formate dehydrogenase [KO:K00124]
JHW48_17675  fdxH; formate dehydrogenase subunit beta [KO:K00124]
JHW48_07980  formate dehydrogenase subunit gamma [KO:K00127]
JHW48_17680  formate dehydrogenase subunit gamma [KO:K00127]
JHW48_12775  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
paex00010  Glycolysis / Gluconeogenesis
paex00020  Citrate cycle (TCA cycle)
paex00030  Pentose phosphate pathway
paex00053  Ascorbate and aldarate metabolism
paex00071  Fatty acid degradation
paex00230  Purine metabolism
paex00250  Alanine, aspartate and glutamate metabolism
paex00260  Glycine, serine and threonine metabolism
paex00620  Pyruvate metabolism
paex00710  Carbon fixation by Calvin cycle
paex00750  Vitamin B6 metabolism
paex00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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