KEGG   PATHWAY: palf00020
Entry
palf00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pantoea alfalfae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
palf00020  Citrate cycle (TCA cycle)
palf00020

Module
palf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:palf00020]
palf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:palf00020]
palf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:palf00020]
palf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:palf00020]
palf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:palf00020]
Other DBs
GO: 0006099
Organism
Pantoea alfalfae [GN:palf]
Gene
K6R05_13480  citrate synthase [KO:K01647] [EC:2.3.3.1]
K6R05_08855  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
K6R05_15410  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K6R05_11410  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K6R05_13455  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K6R05_13450  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
K6R05_15435  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K6R05_13440  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K6R05_13445  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K6R05_13465  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K6R05_13460  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K6R05_13475  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
K6R05_13470  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
K6R05_21180  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
K6R05_10025  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K6R05_02545  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K6R05_01100  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
K6R05_21150  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
K6R05_01820  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
K6R05_15445  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
K6R05_15440  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
palf00010  Glycolysis / Gluconeogenesis
palf00053  Ascorbate and aldarate metabolism
palf00061  Fatty acid biosynthesis
palf00071  Fatty acid degradation
palf00190  Oxidative phosphorylation
palf00220  Arginine biosynthesis
palf00250  Alanine, aspartate and glutamate metabolism
palf00280  Valine, leucine and isoleucine degradation
palf00350  Tyrosine metabolism
palf00470  D-Amino acid metabolism
palf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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