KEGG   PATHWAY: pamg00630
Entry
pamg00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas amygdali
Class
Metabolism; Carbohydrate metabolism
Pathway map
pamg00630  Glyoxylate and dicarboxylate metabolism
pamg00630

Module
pamg_M00621  Glycine cleavage system [PATH:pamg00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas amygdali [GN:pamg]
Gene
BKM19_018740  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
BKM19_021110  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
BKM19_027270  malate synthase G [KO:K01638] [EC:2.3.3.9]
BKM19_012635  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BKM19_013075  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BKM19_021255  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BKM19_004895  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
BKM19_017780  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
BKM19_016440  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
BKM19_006635  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
BKM19_022735  3-hydroxybutyryl-CoA dehydratase [KO:K17865] [EC:4.2.1.55]
BKM19_030840  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
BKM19_004115  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
BKM19_019475  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
BKM19_019480  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
BKM19_019485  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BKM19_026335  catalase [KO:K03781] [EC:1.11.1.6]
BKM19_002915  catalase HPII [KO:K03781] [EC:1.11.1.6]
BKM19_019585  catalase [KO:K03781] [EC:1.11.1.6]
BKM19_002110  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BKM19_007985  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BKM19_026845  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BKM19_010685  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
BKM19_006075  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
BKM19_014205  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
BKM19_027940  glnA; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
BKM19_028300  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BKM19_028305  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BKM19_020435  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BKM19_025180  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BKM19_027360  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BKM19_008280  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
BKM19_002735  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
BKM19_008275  gcvT; glycine cleavage system aminomethyltransferase T [KO:K00605] [EC:2.1.2.10]
BKM19_012670  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BKM19_002740  gcvH; glycine cleavage system protein H [KO:K02437]
BKM19_008285  gcvH; glycine cleavage system protein H [KO:K02437]
BKM19_017275  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
BKM19_018280  glycerate kinase [KO:K00865] [EC:2.7.1.165]
BKM19_014970  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BKM19_010420  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BKM19_008480  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BKM19_013930  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BKM19_023775  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BKM19_027390  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BKM19_008715  amiF; formamidase [KO:K01455] [EC:3.5.1.49]
BKM19_028050  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pamg00010  Glycolysis / Gluconeogenesis
pamg00020  Citrate cycle (TCA cycle)
pamg00030  Pentose phosphate pathway
pamg00053  Ascorbate and aldarate metabolism
pamg00071  Fatty acid degradation
pamg00230  Purine metabolism
pamg00250  Alanine, aspartate and glutamate metabolism
pamg00260  Glycine, serine and threonine metabolism
pamg00620  Pyruvate metabolism
pamg00710  Carbon fixation by Calvin cycle
pamg00750  Vitamin B6 metabolism
pamg00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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