KEGG   PATHWAY: pans00020
Entry
pans00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pantoea sp. SO10
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pans00020  Citrate cycle (TCA cycle)
pans00020

Module
pans_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pans00020]
pans_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pans00020]
pans_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pans00020]
pans_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pans00020]
pans_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pans00020]
Other DBs
GO: 0006099
Organism
Pantoea sp. SO10 [GN:pans]
Gene
FCN45_05830  citrate synthase [KO:K01647] [EC:2.3.3.1]
FCN45_10370  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FCN45_03560  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FCN45_07820  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FCN45_05855  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FCN45_05860  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FCN45_03540  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCN45_05870  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FCN45_05865  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FCN45_05845  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FCN45_05850  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FCN45_05835  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
FCN45_05840  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
FCN45_08000  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FCN45_09020  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FCN45_17285  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FCN45_18560  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FCN45_22480  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FCN45_17995  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FCN45_03530  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FCN45_03535  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
FCN45_10155  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pans00010  Glycolysis / Gluconeogenesis
pans00053  Ascorbate and aldarate metabolism
pans00061  Fatty acid biosynthesis
pans00071  Fatty acid degradation
pans00190  Oxidative phosphorylation
pans00220  Arginine biosynthesis
pans00250  Alanine, aspartate and glutamate metabolism
pans00280  Valine, leucine and isoleucine degradation
pans00350  Tyrosine metabolism
pans00470  D-Amino acid metabolism
pans00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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