KEGG   PATHWAY: parg00020
Entry
parg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Parageobacillus sp. KH3-4
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
parg00020  Citrate cycle (TCA cycle)
parg00020

Module
parg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:parg00020]
parg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:parg00020]
parg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:parg00020]
parg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:parg00020]
parg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:parg00020]
Other DBs
GO: 0006099
Organism
Parageobacillus sp. KH3-4 [GN:parg]
Gene
PspKH34_01670  citA; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
PspKH34_07390  citZ; citrate synthase 2 [KO:K01659] [EC:2.3.3.5]
PspKH34_24580  citB; aconitate hydratase A [KO:K27802] [EC:4.2.1.3 4.2.1.99]
PspKH34_07400  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
PspKH34_28010  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PspKH34_28000  odhB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
PspKH34_14400  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PspKH34_11550  bfmbC; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PspKH34_27590  pdhD; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PspKH34_25330  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PspKH34_25320  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PspKH34_26250  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
PspKH34_26260  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
PspKH34_33030  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
PspKH34_08120  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PspKH34_08130  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PspKH34_08110  sdhC; succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
PspKH34_33860  fumA; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
PspKH34_07410  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PspKH34_34620  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PspKH34_27400  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PspKH34_06490  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
PspKH34_27620  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PspKH34_27610  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
PspKH34_22760  pdhC_1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
PspKH34_23950  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
PspKH34_27600  pdhC_2; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
parg00010  Glycolysis / Gluconeogenesis
parg00053  Ascorbate and aldarate metabolism
parg00061  Fatty acid biosynthesis
parg00071  Fatty acid degradation
parg00190  Oxidative phosphorylation
parg00220  Arginine biosynthesis
parg00250  Alanine, aspartate and glutamate metabolism
parg00280  Valine, leucine and isoleucine degradation
parg00350  Tyrosine metabolism
parg00470  D-Amino acid metabolism
parg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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