KEGG   PATHWAY: pars00020
Entry
pars00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paracoccus suum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pars00020  Citrate cycle (TCA cycle)
pars00020

Module
pars_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pars00020]
pars_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pars00020]
pars_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pars00020]
pars_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pars00020]
pars_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pars00020]
Other DBs
GO: 0006099
Organism
Paracoccus suum [GN:pars]
Gene
DRW48_08040  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DRW48_04380  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
DRW48_00595  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
DRW48_08790  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DRW48_15170  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DRW48_15175  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
DRW48_15195  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DRW48_15580  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DRW48_15160  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DRW48_15155  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DRW48_09400  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DRW48_09415  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DRW48_09390  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DRW48_09395  succinate dehydrogenase [KO:K00242]
DRW48_03100  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DRW48_12270  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DRW48_15150  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DRW48_00430  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DRW48_06130  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DRW48_00160  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DRW48_00165  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
DRW48_00170  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pars00010  Glycolysis / Gluconeogenesis
pars00053  Ascorbate and aldarate metabolism
pars00061  Fatty acid biosynthesis
pars00071  Fatty acid degradation
pars00190  Oxidative phosphorylation
pars00220  Arginine biosynthesis
pars00250  Alanine, aspartate and glutamate metabolism
pars00280  Valine, leucine and isoleucine degradation
pars00350  Tyrosine metabolism
pars00470  D-Amino acid metabolism
pars00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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