KEGG   PATHWAY: paun00020
Entry
paun00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus aurantius
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
paun00020  Citrate cycle (TCA cycle)
paun00020

Module
paun_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:paun00020]
paun_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:paun00020]
paun_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:paun00020]
paun_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:paun00020]
Other DBs
GO: 0006099
Organism
Paenibacillus aurantius [GN:paun]
Gene
MJA45_20245  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
MJA45_03380  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MJA45_20240  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MJA45_10080  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MJA45_10085  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MJA45_17125  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MJA45_17260  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MJA45_12560  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MJA45_12565  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MJA45_12090  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MJA45_12085  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MJA45_06395  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MJA45_06400  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MJA45_06390  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
MJA45_20180  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
MJA45_04960  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MJA45_20235  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MJA45_24225  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MJA45_17140  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MJA45_17135  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MJA45_17130  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
MJA45_12605  thiamine pyrophosphate-dependent enzyme [KO:K00169] [EC:1.2.7.1]
MJA45_12600  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
paun00010  Glycolysis / Gluconeogenesis
paun00053  Ascorbate and aldarate metabolism
paun00061  Fatty acid biosynthesis
paun00071  Fatty acid degradation
paun00190  Oxidative phosphorylation
paun00220  Arginine biosynthesis
paun00250  Alanine, aspartate and glutamate metabolism
paun00280  Valine, leucine and isoleucine degradation
paun00350  Tyrosine metabolism
paun00470  D-Amino acid metabolism
paun00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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