KEGG   PATHWAY: paut00020
Entry
paut00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudonocardia autotrophica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
paut00020  Citrate cycle (TCA cycle)
paut00020

Module
paut_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:paut00020]
paut_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:paut00020]
paut_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:paut00020]
paut_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:paut00020]
paut_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:paut00020]
Other DBs
GO: 0006099
Organism
Pseudonocardia autotrophica [GN:paut]
Gene
Pdca_61780  prpc; citrate synthase [KO:K01647] [EC:2.3.3.1]
Pdca_07350  gltA_1; citrate synthase [KO:K01647] [EC:2.3.3.1]
Pdca_07380  gltA_2; citrate synthase [KO:K01647] [EC:2.3.3.1]
Pdca_10270  gltA_3; citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
Pdca_61650  citrate synthase [KO:K01647] [EC:2.3.3.1]
Pdca_32480  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Pdca_24100  leuB_2; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Pdca_57310  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Pdca_55800  kgd; 2-oxoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Pdca_24610  pdhD_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pdca_33500  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pdca_59720  korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Pdca_59730  korB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Pdca_57450  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Pdca_57460  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Pdca_20070  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Pdca_20110  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Pdca_20080  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Pdca_20120  sdhB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Pdca_20060  succinate dehydrogenase [KO:K00241]
Pdca_23400  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
Pdca_10670  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Pdca_49360  hypothetical protein [KO:K00024] [EC:1.1.1.37]
Pdca_42100  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Pdca_18350  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Pdca_67540  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
Pdca_23220  aceE_2; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Pdca_20660  aceE_1; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Pdca_24600  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
paut00010  Glycolysis / Gluconeogenesis
paut00053  Ascorbate and aldarate metabolism
paut00061  Fatty acid biosynthesis
paut00071  Fatty acid degradation
paut00190  Oxidative phosphorylation
paut00220  Arginine biosynthesis
paut00250  Alanine, aspartate and glutamate metabolism
paut00280  Valine, leucine and isoleucine degradation
paut00350  Tyrosine metabolism
paut00470  D-Amino acid metabolism
paut00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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