KEGG   PATHWAY: pcp00020
Entry
pcp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas chlororaphis subsp. aurantiaca
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcp00020  Citrate cycle (TCA cycle)
pcp00020

Module
pcp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcp00020]
pcp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcp00020]
pcp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcp00020]
pcp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcp00020]
pcp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcp00020]
Other DBs
GO: 0006099
Organism
Pseudomonas chlororaphis subsp. aurantiaca [GN:pcp]
Gene
JM49_21735  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
JM49_20910  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
JM49_20560  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
JM49_17785  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
JM49_11740  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JM49_11750  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JM49_21710  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
JM49_21705  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
JM49_00365  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
JM49_18440  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
JM49_21700  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
JM49_21690  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
JM49_21695  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
JM49_29985  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
JM49_21720  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
JM49_21715  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
JM49_21730  succinate dehydrogenase [KO:K00241]
JM49_21725  succinate dehydrogenase [KO:K00242]
JM49_07220  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JM49_09230  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JM49_25745  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
JM49_05670  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
JM49_11885  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
JM49_00570  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
JM49_00575  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
JM49_29020  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
JM49_27835  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
JM49_19765  acetoin dehydrogenase [KO:K00627] [EC:2.3.1.12]
JM49_27840  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcp00010  Glycolysis / Gluconeogenesis
pcp00053  Ascorbate and aldarate metabolism
pcp00061  Fatty acid biosynthesis
pcp00071  Fatty acid degradation
pcp00190  Oxidative phosphorylation
pcp00220  Arginine biosynthesis
pcp00250  Alanine, aspartate and glutamate metabolism
pcp00280  Valine, leucine and isoleucine degradation
pcp00350  Tyrosine metabolism
pcp00470  D-Amino acid metabolism
pcp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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