KEGG   PATHWAY: pfeo00020
Entry
pfeo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paracoccus ferrooxidans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfeo00020  Citrate cycle (TCA cycle)
pfeo00020

Module
pfeo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfeo00020]
pfeo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfeo00020]
pfeo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfeo00020]
pfeo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfeo00020]
pfeo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfeo00020]
Other DBs
GO: 0006099
Organism
Paracoccus ferrooxidans [GN:pfeo]
Gene
E3U26_23555  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E3U26_19685  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E3U26_18360  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E3U26_10405  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E3U26_10400  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E3U26_13290  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E3U26_15525  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E3U26_10385  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E3U26_10680  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E3U26_10415  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E3U26_10425  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E3U26_19645  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
E3U26_10470  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E3U26_14360  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E3U26_10485  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E3U26_14355  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E3U26_10460  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E3U26_14350  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E3U26_10465  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E3U26_14655  FAD-binding protein [KO:K00244] [EC:1.3.5.1]
E3U26_14640  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
E3U26_14645  succinate dehydrogenase [KO:K00246]
E3U26_14650  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00247]
E3U26_19865  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E3U26_10430  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E3U26_21085  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
E3U26_22100  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
E3U26_17905  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
E3U26_19370  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
E3U26_19365  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
E3U26_13390  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
E3U26_13750  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
E3U26_19360  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfeo00010  Glycolysis / Gluconeogenesis
pfeo00053  Ascorbate and aldarate metabolism
pfeo00061  Fatty acid biosynthesis
pfeo00071  Fatty acid degradation
pfeo00190  Oxidative phosphorylation
pfeo00220  Arginine biosynthesis
pfeo00250  Alanine, aspartate and glutamate metabolism
pfeo00280  Valine, leucine and isoleucine degradation
pfeo00350  Tyrosine metabolism
pfeo00470  D-Amino acid metabolism
pfeo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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