KEGG   PATHWAY: pfit00020
Entry
pfit00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas fitomaticsae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfit00020  Citrate cycle (TCA cycle)
pfit00020

Module
pfit_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfit00020]
pfit_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfit00020]
pfit_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfit00020]
pfit_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfit00020]
pfit_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfit00020]
Other DBs
GO: 0006099
Organism
Pseudomonas fitomaticsae [GN:pfit]
Gene
KJY40_09380  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KJY40_20035  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KJY40_17765  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KJY40_18540  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KJY40_18545  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KJY40_09405  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KJY40_09410  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KJY40_18060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KJY40_00765  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KJY40_09415  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KJY40_09425  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KJY40_09420  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KJY40_01530  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
KJY40_09395  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KJY40_09400  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KJY40_09385  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KJY40_09390  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KJY40_23895  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KJY40_21120  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KJY40_05395  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KJY40_12310  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KJY40_25285  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KJY40_00605  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
KJY40_00600  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
KJY40_02315  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KJY40_03310  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KJY40_03305  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfit00010  Glycolysis / Gluconeogenesis
pfit00053  Ascorbate and aldarate metabolism
pfit00061  Fatty acid biosynthesis
pfit00071  Fatty acid degradation
pfit00190  Oxidative phosphorylation
pfit00220  Arginine biosynthesis
pfit00250  Alanine, aspartate and glutamate metabolism
pfit00280  Valine, leucine and isoleucine degradation
pfit00350  Tyrosine metabolism
pfit00470  D-Amino acid metabolism
pfit00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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