KEGG   PATHWAY: pfz00020
Entry
pfz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas fragi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfz00020  Citrate cycle (TCA cycle)
pfz00020

Module
pfz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfz00020]
pfz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfz00020]
pfz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfz00020]
pfz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfz00020]
Other DBs
GO: 0006099
Organism
Pseudomonas fragi [GN:pfz]
Gene
AV641_07735  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AV641_08470  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AV641_16450  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AV641_07975  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AV641_07760  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AV641_07765  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AV641_07770  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AV641_14780  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AV641_07780  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AV641_07775  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AV641_22395  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AV641_07750  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AV641_07755  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AV641_07740  succinate dehydrogenase [KO:K00241]
AV641_07745  succinate dehydrogenase [KO:K00242]
AV641_16780  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AV641_18935  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AV641_08075  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AV641_13755  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AV641_03955  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AV641_22545  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
AV641_22540  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
AV641_21475  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AV641_21035  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AV641_21040  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfz00010  Glycolysis / Gluconeogenesis
pfz00053  Ascorbate and aldarate metabolism
pfz00061  Fatty acid biosynthesis
pfz00071  Fatty acid degradation
pfz00190  Oxidative phosphorylation
pfz00220  Arginine biosynthesis
pfz00250  Alanine, aspartate and glutamate metabolism
pfz00280  Valine, leucine and isoleucine degradation
pfz00350  Tyrosine metabolism
pfz00470  D-Amino acid metabolism
pfz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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