KEGG   PATHWAY: pgs03430
Entry
pgs03430                    Pathway                                
Name
Mismatch repair - Pedobacter ginsengisoli
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
pgs03430  Mismatch repair
pgs03430

Other DBs
GO: 0006298
Organism
Pedobacter ginsengisoli [GN:pgs]
Gene
CPT03_09460  DNA mismatch repair protein MutS [KO:K03555]
CPT03_10335  hypothetical protein [KO:K03555]
CPT03_03045  endonuclease MutS2 [KO:K07456]
CPT03_20890  DNA mismatch repair protein MutL [KO:K03572]
CPT03_01565  ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
CPT03_07010  hypothetical protein [KO:K03657] [EC:5.6.2.4]
CPT03_07955  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
CPT03_07950  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
CPT03_15490  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
CPT03_19425  single-stranded DNA-binding protein [KO:K03111]
CPT03_22290  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
CPT03_12630  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
CPT03_21745  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
CPT03_00770  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
CPT03_18955  hypothetical protein [KO:K02341] [EC:2.7.7.7]
CPT03_04900  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CPT03_09440  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CPT03_13000  DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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