KEGG   PATHWAY: ppai00630
Entry
ppai00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia pallida
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppai00630  Glyoxylate and dicarboxylate metabolism
ppai00630

Module
ppai_M00012  Glyoxylate cycle [PATH:ppai00630]
ppai_M00621  Glycine cleavage system [PATH:ppai00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia pallida [GN:ppai]
Gene
E1956_35800  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
E1956_11575  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
E1956_20685  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
E1956_26320  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
E1956_32350  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
E1956_40310  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
E1956_40560  malate synthase G [KO:K01638] [EC:2.3.3.9]
E1956_11595  malate synthase A [KO:K01638] [EC:2.3.3.9]
E1956_26535  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E1956_42405  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E1956_18080  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E1956_26570  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E1956_44105  citrate synthase [KO:K01647] [EC:2.3.3.1]
E1956_06355  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
E1956_08685  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
E1956_10740  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
E1956_22760  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
E1956_38230  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
E1956_26515  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
E1956_38355  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
E1956_20560  sucD; succinate--CoA ligase subunit alpha [KO:K08692] [EC:6.2.1.9]
E1956_20555  malate--CoA ligase subunit beta [KO:K14067] [EC:6.2.1.9]
E1956_16065  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_19325  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_28560  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_29330  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_29720  thiolase family protein [KO:K00626] [EC:2.3.1.9]
E1956_32160  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_33475  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_37160  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_37190  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_38845  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_40320  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_42900  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_43060  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_43970  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_06970  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_08660  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_10135  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_10435  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_10620  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E1956_32155  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
E1956_40710  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
E1956_10140  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
E1956_20570  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
E1956_32890  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
E1956_00355  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
E1956_32895  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
E1956_00360  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
E1956_32900  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
E1956_00365  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
E1956_17520  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
E1956_32915  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
E1956_00390  catalase [KO:K03781] [EC:1.11.1.6]
E1956_42410  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
E1956_27355  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
E1956_01910  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
E1956_26745  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
E1956_07780  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
E1956_10895  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
E1956_20550  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
E1956_21070  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
E1956_34185  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
E1956_20415  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
E1956_04970  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
E1956_07830  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
E1956_20545  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
E1956_37015  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
E1956_20600  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
E1956_25160  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E1956_30490  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E1956_37695  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
E1956_38720  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E1956_12285  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
E1956_19005  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
E1956_20540  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
E1956_31545  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
E1956_06190  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
E1956_03230  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
E1956_20375  aminomethyl transferase family protein [KO:K00605] [EC:2.1.2.10]
E1956_20665  aminomethyl transferase family protein [KO:K00605] [EC:2.1.2.10]
E1956_03240  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
E1956_17485  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E1956_31210  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E1956_09280  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E1956_12130  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E1956_03235  gcvH; glycine cleavage system protein GcvH [KO:K02437]
E1956_09770  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
E1956_09765  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
E1956_27755  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
E1956_40395  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
E1956_09760  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
E1956_10310  glycerate kinase [KO:K00865] [EC:2.7.1.165]
E1956_21745  aldA; aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
E1956_32125  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
E1956_40265  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
E1956_00755  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
E1956_28050  NAD-dependent formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
E1956_34720  NAD-dependent formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
E1956_07325  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
E1956_22410  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
E1956_42230  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
E1956_07330  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
E1956_22405  fdxH; formate dehydrogenase subunit beta [KO:K00124]
E1956_42235  fdxH; formate dehydrogenase subunit beta [KO:K00124]
E1956_07335  formate dehydrogenase beta subunit [KO:K00124]
E1956_22400  formate dehydrogenase subunit gamma [KO:K00127]
E1956_42240  formate dehydrogenase subunit gamma [KO:K00127]
E1956_07340  formate dehydrogenase [KO:K00127]
E1956_00215  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
E1956_20625  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E1956_31470  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E1956_01235  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E1956_21105  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
E1956_09440  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
E1956_25435  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
E1956_09445  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ppai00010  Glycolysis / Gluconeogenesis
ppai00020  Citrate cycle (TCA cycle)
ppai00030  Pentose phosphate pathway
ppai00053  Ascorbate and aldarate metabolism
ppai00071  Fatty acid degradation
ppai00230  Purine metabolism
ppai00250  Alanine, aspartate and glutamate metabolism
ppai00260  Glycine, serine and threonine metabolism
ppai00620  Pyruvate metabolism
ppai00710  Carbon fixation by Calvin cycle
ppai00750  Vitamin B6 metabolism
ppai00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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