KEGG   PATHWAY: ppb00010
Entry
ppb00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Pseudomonas putida BIRD-1
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppb00010  Glycolysis / Gluconeogenesis
ppb00010

Module
ppb_M00002  Glycolysis, core module involving three-carbon compounds [PATH:ppb00010]
ppb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppb00010]
ppb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppb00010]
Other DBs
GO: 0006096 0006094
Organism
Pseudomonas putida BIRD-1 [GN:ppb]
Gene
PPUBIRD1_1061  glk; Glk [KO:K00845] [EC:2.7.1.2]
PPUBIRD1_4402  pgi; Pgi [KO:K01810] [EC:5.3.1.9]
PPUBIRD1_4829  fbp; Fbp [KO:K03841] [EC:3.1.3.11]
PPUBIRD1_4744  fda; Fda [KO:K01624] [EC:4.1.2.13]
PPUBIRD1_4417  tpiA; TpiA [KO:K01803] [EC:5.3.1.1]
PPUBIRD1_3505  gap_2; Gap_2 [KO:K00134] [EC:1.2.1.12]
PPUBIRD1_1059  gap; Gap [KO:K00134] [EC:1.2.1.12]
PPUBIRD1_4747  pgk; Pgk [KO:K00927] [EC:2.7.2.3]
PPUBIRD1_4844  pgm; Pgm [KO:K15633] [EC:5.4.2.12]
PPUBIRD1_4003  eno; Eno [KO:K01689] [EC:4.2.1.11]
PPUBIRD1_1555  pykF; PykF [KO:K00873] [EC:2.7.1.40]
PPUBIRD1_4200  pykA; PykA [KO:K00873] [EC:2.7.1.40]
PPUBIRD1_3571  ppsA; PpsA [KO:K01007] [EC:2.7.9.2]
PPUBIRD1_0372  aceE; AceE [KO:K00163] [EC:1.2.4.1]
PPUBIRD1_0603  acoC; AcoC [KO:K00627] [EC:2.3.1.12]
PPUBIRD1_0371  aceF; AceF [KO:K00627] [EC:2.3.1.12]
PPUBIRD1_1665  lpdG; LpdG [KO:K00382] [EC:1.8.1.4]
PPUBIRD1_1438  lpdV; LpdV [KO:K00382] [EC:1.8.1.4]
PPUBIRD1_0036  lpd3; Lpd3 [KO:K00382] [EC:1.8.1.4]
PPUBIRD1_3999  D-isomer specific 2-hydroxyacid dehydrogenase family protein [KO:K00121] [EC:1.1.1.284 1.1.1.1]
PPUBIRD1_1896  Alcohol dehydrogenase [KO:K13953] [EC:1.1.1.1]
PPUBIRD1_3256  Alcohol dehydrogenase [KO:K13979] [EC:1.1.1.2]
PPUBIRD1_2997  Pyrrolo-quinoline quinone [KO:K00114] [EC:1.1.2.8]
PPUBIRD1_3002  qedH; QedH [KO:K00114] [EC:1.1.2.8]
PPUBIRD1_2165  Gluconate 2-dehydrogenase acceptor subunit [KO:K22474] [EC:1.1.5.5]
PPUBIRD1_2399  Gluconate 2-dehydrogenase acceptor subunit [KO:K22474] [EC:1.1.5.5]
PPUBIRD1_2101  Aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
PPUBIRD1_2995  Aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
PPUBIRD1_0594  Aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
PPUBIRD1_3438  fadD; FadD [KO:K01895] [EC:6.2.1.1]
PPUBIRD1_4403  Acetyl-coenzyme A synthetase 2 [KO:K01895] [EC:6.2.1.1]
PPUBIRD1_1414  Acetyl-coenzyme A synthetase 1 [KO:K01895] [EC:6.2.1.1]
PPUBIRD1_2038  Acyl-CoA synthetase, putative [KO:K24012] [EC:6.2.1.13]
PPUBIRD1_2443  pauA; PauA [KO:K24012] [EC:6.2.1.13]
PPUBIRD1_1210  Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
PPUBIRD1_2214  Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
PPUBIRD1_5082  Phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
PPUBIRD1_5124  Aldose 1-epimerase [KO:K01792] [EC:5.1.3.15]
PPUBIRD1_2348  Glyceraldehyde-3-phosphate dehydrogenase, putative [KO:K00131] [EC:1.2.1.9]
PPUBIRD1_0280  pckA; PckA [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppb00020  Citrate cycle (TCA cycle)
ppb00030  Pentose phosphate pathway
ppb00500  Starch and sucrose metabolism
ppb00620  Pyruvate metabolism
ppb00640  Propanoate metabolism
ppb00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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