KEGG   PATHWAY: ppq00020
Entry
ppq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus polymyxa SQR-21
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppq00020  Citrate cycle (TCA cycle)
ppq00020

Module
ppq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppq00020]
ppq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppq00020]
ppq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppq00020]
ppq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppq00020]
Other DBs
GO: 0006099
Organism
Paenibacillus polymyxa SQR-21 [GN:ppq]
Gene
PPSQR21_016740  gltA; 2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
PPSQR21_007730  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
PPSQR21_016750  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PPSQR21_014260  sucA; oxoglutarate dehydrogenase (succinyl-transferring), e1 component [KO:K00164] [EC:1.2.4.2]
PPSQR21_014270  aceF; 2-oxoglutarate dehydrogenase, e2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
PPSQR21_006500  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PPSQR21_029800  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PPSQR21_026900  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PPSQR21_019540  sucD; succinyl-CoA ligase [KO:K01902] [EC:6.2.1.5]
PPSQR21_019530  sucC; succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PPSQR21_041080  sdhA; succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PPSQR21_041070  frdB; succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
PPSQR21_041090  sdhC; succinate dehydrogenase subunit c [KO:K00241]
PPSQR21_026040  fumC; fumarate hydratase, class ii [KO:K01679] [EC:4.2.1.2]
PPSQR21_016760  malate dehydrogenase, nad-dependent [KO:K00024] [EC:1.1.1.37]
PPSQR21_050960  malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
PPSQR21_026930  acoA; pyruvate dehydrogenase (acetyl-transferring) e1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
PPSQR21_026920  acoB; pyruvate dehydrogenase, acetyl-transferring [KO:K00162] [EC:1.2.4.1]
PPSQR21_026910  hypothetical protein [KO:K00627] [EC:2.3.1.12]
PPSQR21_029530  porA; pyruvate:ferredoxin oxidoreductase and like 2-oxoacid:ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
PPSQR21_029540  porG; pyruvate:ferredoxin oxidoreductase and like 2-oxoacid:ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppq00010  Glycolysis / Gluconeogenesis
ppq00053  Ascorbate and aldarate metabolism
ppq00061  Fatty acid biosynthesis
ppq00071  Fatty acid degradation
ppq00190  Oxidative phosphorylation
ppq00220  Arginine biosynthesis
ppq00250  Alanine, aspartate and glutamate metabolism
ppq00280  Valine, leucine and isoleucine degradation
ppq00350  Tyrosine metabolism
ppq00470  D-Amino acid metabolism
ppq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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