KEGG   PATHWAY: ppuh00630
Entry
ppuh00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas putida HB3267
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppuh00630  Glyoxylate and dicarboxylate metabolism
ppuh00630

Module
ppuh_M00012  Glyoxylate cycle [PATH:ppuh00630]
ppuh_M00621  Glycine cleavage system [PATH:ppuh00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas putida HB3267 [GN:ppuh]
Gene
B479_17490  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
B479_09015  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
B479_22850  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
B479_19045  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
B479_02260  malate synthase G [KO:K01638] [EC:2.3.3.9]
B479_15995  malate synthase G [KO:K01638] [EC:2.3.3.9]
B479_03725  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B479_17890  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
B479_09490  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
B479_08190  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
B479_09510  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B479_22460  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B479_03420  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B479_07960  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B479_16030  beta-ketothiolase [KO:K00626] [EC:2.3.1.9]
B479_09025  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B479_19360  dehydratase [KO:K17865] [EC:4.2.1.55]
B479_15975  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
B479_15980  glcE; glycolate oxidase FAD binding subunit [KO:K11472] [EC:1.1.99.14]
B479_15985  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
B479_02890  catalase [KO:K03781] [EC:1.11.1.6]
B479_00905  katE; hydroperoxidase II [KO:K03781] [EC:1.11.1.6]
B479_12355  catalase domain-containing protein [KO:K03781] [EC:1.11.1.6]
B479_22275  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
B479_04305  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
B479_00800  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
B479_07445  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
B479_02560  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
B479_25445  glutamate-putrescine ligase [KO:K01915] [EC:6.3.1.2]
B479_25455  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B479_13545  glutamate-putrescine ligase [KO:K01915] [EC:6.3.1.2]
B479_26230  glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
B479_19335  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B479_11380  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B479_15670  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B479_24710  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B479_03790  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
B479_02060  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
B479_05235  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
B479_25495  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
B479_05225  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
B479_25505  gcvT; glycine cleavage system aminomethyltransferase T [KO:K00605] [EC:2.1.2.10]
B479_26565  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
B479_17855  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
B479_18925  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
B479_05240  glycine cleavage system protein H [KO:K02437]
B479_25500  glycine cleavage system protein H [KO:K02437]
B479_18350  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
B479_18355  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
B479_18360  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
B479_13395  glycerate kinase [KO:K00865] [EC:2.7.1.165]
B479_18365  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
B479_05400  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
B479_08875  putative formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
B479_08870  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
B479_02930  molybdopterin oxidoreductase Fe4S4 region [KO:K00123] [EC:1.17.1.9]
B479_02935  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
B479_08865  NADH dehydrogenase (quinone) [KO:K00124]
B479_02940  nitrate-inducible formate dehydrogenase subunit beta [KO:K00124]
B479_08860  formate dehydrogenase subunit gamma [KO:K00127]
B479_02945  formate dehydrogenase subunit gamma [KO:K00127]
B479_21565  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
B479_02085  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
B479_16230  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
B479_24610  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ppuh00010  Glycolysis / Gluconeogenesis
ppuh00020  Citrate cycle (TCA cycle)
ppuh00030  Pentose phosphate pathway
ppuh00053  Ascorbate and aldarate metabolism
ppuh00071  Fatty acid degradation
ppuh00230  Purine metabolism
ppuh00250  Alanine, aspartate and glutamate metabolism
ppuh00260  Glycine, serine and threonine metabolism
ppuh00620  Pyruvate metabolism
ppuh00710  Carbon fixation by Calvin cycle
ppuh00750  Vitamin B6 metabolism
ppuh00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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