KEGG   PATHWAY: ppuj00020
Entry
ppuj00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pectobacterium punjabense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppuj00020  Citrate cycle (TCA cycle)
ppuj00020

Module
ppuj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppuj00020]
ppuj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppuj00020]
ppuj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppuj00020]
ppuj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppuj00020]
ppuj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppuj00020]
Other DBs
GO: 0006099
Organism
Pectobacterium punjabense [GN:ppuj]
Gene
E2566_19865  citrate synthase [KO:K01647] [EC:2.3.3.1]
E2566_06835  citrate synthase [KO:K01647] [EC:2.3.3.1]
E2566_12300  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E2566_17970  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
E2566_10015  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E2566_06860  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E2566_06865  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E2566_18030  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E2566_06875  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E2566_06870  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E2566_06850  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E2566_06855  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E2566_06840  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
E2566_06845  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
E2566_19060  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
E2566_19065  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
E2566_19070  frdC; fumarate reductase subunit FrdC [KO:K00246]
E2566_19075  frdD; fumarate reductase subunit FrdD [KO:K00247]
E2566_04340  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
E2566_10870  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E2566_03350  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E2566_14760  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
E2566_19780  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
E2566_18040  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
E2566_18035  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
E2566_04025  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppuj00010  Glycolysis / Gluconeogenesis
ppuj00053  Ascorbate and aldarate metabolism
ppuj00061  Fatty acid biosynthesis
ppuj00071  Fatty acid degradation
ppuj00190  Oxidative phosphorylation
ppuj00220  Arginine biosynthesis
ppuj00250  Alanine, aspartate and glutamate metabolism
ppuj00280  Valine, leucine and isoleucine degradation
ppuj00350  Tyrosine metabolism
ppuj00470  D-Amino acid metabolism
ppuj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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