KEGG   PATHWAY: ppx02025
Entry
ppx02025                    Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas putida DOT-T1E
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
ppx02025  Biofilm formation - Pseudomonas aeruginosa
ppx02025

Organism
Pseudomonas putida DOT-T1E [GN:ppx]
Gene
T1E_1117  pilJ; Protein pilJ [KO:K02660]
T1E_1116  pilI; putative CheW protein [KO:K02659]
T1E_1119  CheA signal transduction histidine kinase [KO:K06596]
T1E_1120  CheW domain-containing protein [KO:K06598]
T1E_1115  pilH; response regulator receiver protein [KO:K02658]
T1E_1114  pilG; response regulator receiver protein [KO:K02657]
T1E_1194  icc; icc protein [KO:K03651] [EC:3.1.4.53]
T1E_5225  vfr; cAMP-regulatory protein [KO:K10914]
T1E_2339  ntrC; sigma54 specific transcriptional regulator, Fis [KO:K10941]
T1E_2136  trpE; Anthranilate synthase component 1 [KO:K01657] [EC:4.1.3.27]
T1E_5221  trpG; anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
T1E_3671  lemA; Sensor protein gacS [KO:K07678] [EC:2.7.13.3]
T1E_4928  integral membrane sensor signal transduction [KO:K20971]
T1E_3703  integral membrane sensor hybrid histidine kinase [KO:K20972]
T1E_0041  repB; DNA-binding response regulator GacA [KO:K07689]
T1E_2676  two component LuxR family transcriptional regula [KO:K07689]
T1E_5794  RsmY RNA family [KO:K20969]
T1E_5832  PrrB/RsmZ RNA family [KO:K20970]
T1E_3894  carbon storage regulator, CsrA [KO:K03563]
T1E_1472  Carbon storage regulator-like protein [KO:K03563]
T1E_2398  csrA-2; Carbon storage regulator -like protein [KO:K03563]
T1E_1489  dhkJ; histidine kinase [KO:K20973] [EC:2.7.13.3]
T1E_2381  luxQ; integral membrane sensor hybrid histidine kinase [KO:K20974] [EC:2.7.13.3]
T1E_2668  PAS/PAC sensor hybrid histidine kinase [KO:K20975] [EC:2.7.13.3]
T1E_2328  Hpt protein [KO:K20976]
T1E_2329  hypothetical protein [KO:K20977]
T1E_2330  anti-sigma-factor antagonist [KO:K20978]
T1E_5093  anti-sigma-28 factor, FlgM [KO:K02398]
T1E_2421  fliA; flagellar biosynthesis sigma factor [KO:K02405]
T1E_2449  hypothetical protein [KO:K11890]
T1E_0408  ImcF domain-containing protein [KO:K11891]
T1E_0057  hypothetical protein [KO:K11891]
T1E_2448  ompA; OmpA domain-containing protein [KO:K11891]
T1E_2450  ImcF domain-containing protein [KO:K11891]
T1E_0047  hypothetical protein [KO:K11893]
T1E_0418  hypothetical protein [KO:K11893]
T1E_2452  hypothetical protein [KO:K11893]
T1E_2446  hypothetical protein [KO:K11902]
T1E_0054  hypothetical protein [KO:K11901]
T1E_0411  hypothetical protein [KO:K11901]
T1E_2459  hypothetical protein [KO:K11901]
T1E_0053  hypothetical protein [KO:K11900]
T1E_0412  hypothetical protein [KO:K11900]
T1E_2458  hypothetical protein [KO:K11900]
T1E_2447  hypothetical protein [KO:K11903]
T1E_2490  hcpC; hcp protein [KO:K11903]
T1E_0050  hypothetical protein [KO:K11895]
T1E_0415  hypothetical protein [KO:K11895]
T1E_2455  hypothetical protein [KO:K11895]
T1E_2454  clpB5; Chaperone protein clpB [KO:K11907]
T1E_2864  methyl-accepting chemotaxis sensory transducer [KO:K13487]
T1E_2868  frzE; CheA signal transduction histidine kinase [KO:K13490]
T1E_2865  CheW domain-containing protein [KO:K13488]
T1E_2867  putative CheW protein [KO:K13489]
T1E_2869  Chemotaxis response regulator protein-glutamate [KO:K13491] [EC:3.1.1.61]
T1E_2870  response regulator receiver modulated [KO:K11444] [EC:2.7.7.65]
T1E_0846  yfiN; diguanylate cyclase [KO:K21021] [EC:2.7.7.65]
T1E_2280  putative signaling protein [KO:K21023] [EC:2.7.7.65]
T1E_1924  diguanylate cyclase/phosphodiesterase [KO:K21024] [EC:3.1.4.52]
T1E_3156  mannose-1-phosphate guanylyltransferase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
T1E_3026  algA; mannose-6-phosphate [KO:K16011] [EC:2.7.7.13 5.3.1.8]
T1E_0593  glycosyl transferase, putative [KO:K21001]
T1E_3166  Alginate biosynthesis protein alg44 [KO:K19291] [EC:2.4.1.33]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
ppx02024  Quorum sensing
ppx02040  Flagellar assembly
ppx03070  Bacterial secretion system
KO pathway
ko02025   
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