KEGG   PATHWAY: psac00020
Entry
psac00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Proteiniphilum saccharofermentans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psac00020  Citrate cycle (TCA cycle)
psac00020

Module
psac_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psac00020]
psac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psac00020]
psac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psac00020]
psac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psac00020]
Other DBs
GO: 0006099
Organism
Proteiniphilum saccharofermentans [GN:psac]
Gene
PSM36_0889  citrate synthase [KO:K01659] [EC:2.3.3.5]
PSM36_0887  Aconitate hydratase, mitochondrial [KO:K27802] [EC:4.2.1.3 4.2.1.99]
PSM36_2434  acn; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
PSM36_0888  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
PSM36_0890  Isocitrate dehydrogenase [NADP], chloroplastic [KO:K00031] [EC:1.1.1.42]
PSM36_2995  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PSM36_2994  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
PSM36_2183  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSM36_2445  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSM36_0712  vorB; Ketoisovalerate oxidoreductase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PSM36_2330  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PSM36_0714  vorA; Ketoisovalerate oxidoreductase subunit VorA [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PSM36_2331  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PSM36_0715  Pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
PSM36_0711  2-oxoglutarate-acceptor oxidoreductase subunit [KO:K00176] [EC:1.2.7.3]
PSM36_0686  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
PSM36_0687  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
PSM36_3247  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PSM36_3248  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PSM36_3246  succinate dehydrogenase [KO:K00241]
PSM36_3171  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
PSM36_3172  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
PSM36_2514  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PSM36_1434  putative pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
PSM36_0958  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
PSM36_3393  pckA; Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PSM36_2448  acoA; TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
PSM36_1040  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PSM36_2447  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00162] [EC:1.2.4.1]
PSM36_1041  pdhB; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PSM36_2446  acoC; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
PSM36_1042  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
PSM36_2185  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
PSM36_0571  nifJ; Pyruvate dehydrogenase (NADP(+)) [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psac00010  Glycolysis / Gluconeogenesis
psac00053  Ascorbate and aldarate metabolism
psac00061  Fatty acid biosynthesis
psac00190  Oxidative phosphorylation
psac00220  Arginine biosynthesis
psac00250  Alanine, aspartate and glutamate metabolism
psac00280  Valine, leucine and isoleucine degradation
psac00350  Tyrosine metabolism
psac00470  D-Amino acid metabolism
psac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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