KEGG   PATHWAY: pseb00630
Entry
pseb00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudorhodobacter turbinis
Class
Metabolism; Carbohydrate metabolism
Pathway map
pseb00630  Glyoxylate and dicarboxylate metabolism
pseb00630

Module
pseb_M00373  Ethylmalonyl pathway [PATH:pseb00630]
pseb_M00621  Glycine cleavage system [PATH:pseb00630]
pseb_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pseb00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudorhodobacter turbinis [GN:pseb]
Gene
EOK75_03295  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
EOK75_05150  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EOK75_14200  malate synthase G [KO:K01638] [EC:2.3.3.9]
EOK75_09410  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EOK75_03800  citrate synthase [KO:K01647] [EC:2.3.3.1]
EOK75_00795  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EOK75_07855  thiolase family protein [KO:K00626] [EC:2.3.1.9]
EOK75_11245  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EOK75_08220  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EOK75_15505  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EOK75_11250  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
EOK75_11995  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
EOK75_09460  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
EOK75_15845  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
EOK75_09455  protein meaA [KO:K14447] [EC:5.4.99.63]
EOK75_15210  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
EOK75_09385  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
EOK75_09010  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
EOK75_09400  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
EOK75_00660  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
EOK75_00635  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
EOK75_00670  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
EOK75_04855  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
EOK75_04850  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
EOK75_04845  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
EOK75_02255  catalase [KO:K03781] [EC:1.11.1.6]
EOK75_04815  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
EOK75_02380  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
EOK75_04805  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
EOK75_03265  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
EOK75_11865  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
EOK75_15535  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
EOK75_03360  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
EOK75_08145  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
EOK75_00825  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
EOK75_19895  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EOK75_12515  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EOK75_12535  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EOK75_08835  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EOK75_19940  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
EOK75_12650  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
EOK75_12640  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
EOK75_13280  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EOK75_19545  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EOK75_09450  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EOK75_18925  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EOK75_12645  gcvH; glycine cleavage system protein GcvH [KO:K02437]
EOK75_09005  glycerate kinase [KO:K11529] [EC:2.7.1.165]
EOK75_13150  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
EOK75_17375  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
EOK75_17365  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
EOK75_17360  formate dehydrogenase [KO:K00124]
EOK75_17355  formate dehydrogenase subunit gamma [KO:K00127]
EOK75_11640  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
EOK75_00120  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
EOK75_10655  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
EOK75_15090  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pseb00010  Glycolysis / Gluconeogenesis
pseb00020  Citrate cycle (TCA cycle)
pseb00030  Pentose phosphate pathway
pseb00053  Ascorbate and aldarate metabolism
pseb00071  Fatty acid degradation
pseb00230  Purine metabolism
pseb00250  Alanine, aspartate and glutamate metabolism
pseb00260  Glycine, serine and threonine metabolism
pseb00620  Pyruvate metabolism
pseb00710  Carbon fixation by Calvin cycle
pseb00750  Vitamin B6 metabolism
pseb00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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