KEGG   PATHWAY: pshq00630
Entry
pshq00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudooceanicola spongiae
Class
Metabolism; Carbohydrate metabolism
Pathway map
pshq00630  Glyoxylate and dicarboxylate metabolism
pshq00630

Module
pshq_M00373  Ethylmalonyl pathway [PATH:pshq00630]
pshq_M00621  Glycine cleavage system [PATH:pshq00630]
pshq_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pshq00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudooceanicola spongiae [GN:pshq]
Gene
F3W81_07370  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
F3W81_09390  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
F3W81_15360  malate synthase G [KO:K01638] [EC:2.3.3.9]
F3W81_20265  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F3W81_00035  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
F3W81_02890  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
F3W81_02120  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
F3W81_00800  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
F3W81_13555  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F3W81_15925  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F3W81_16165  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F3W81_20140  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F3W81_20135  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
F3W81_18325  (R)-hydratase [KO:K17865] [EC:4.2.1.55]
F3W81_20350  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
F3W81_18150  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
F3W81_20345  protein meaA [KO:K14447] [EC:5.4.99.63]
F3W81_12655  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
F3W81_20290  hypothetical protein [KO:K14449] [EC:4.2.1.148]
F3W81_17090  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
F3W81_20275  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
F3W81_11920  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01965] [EC:6.4.1.3]
F3W81_11940  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
F3W81_11915  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
F3W81_13845  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
F3W81_13840  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
F3W81_13835  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
F3W81_03415  catalase [KO:K03781] [EC:1.11.1.6]
F3W81_19490  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
F3W81_05890  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
F3W81_05975  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
F3W81_11855  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
F3W81_07395  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
F3W81_08165  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
F3W81_19300  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
F3W81_19790  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
F3W81_09805  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
F3W81_02170  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
F3W81_08680  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F3W81_08690  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F3W81_18445  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F3W81_00720  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
F3W81_12440  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
F3W81_12450  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
F3W81_02700  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F3W81_20220  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F3W81_12445  gcvH; glycine cleavage system protein GcvH [KO:K02437]
F3W81_16600  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
F3W81_05615  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
F3W81_08935  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
F3W81_08945  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
F3W81_08950  formate dehydrogenase [KO:K00124]
F3W81_08955  formate dehydrogenase subunit gamma [KO:K00127]
F3W81_10845  alpha/beta fold hydrolase [KO:K01432] [EC:3.5.1.9]
F3W81_14600  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pshq00010  Glycolysis / Gluconeogenesis
pshq00020  Citrate cycle (TCA cycle)
pshq00030  Pentose phosphate pathway
pshq00053  Ascorbate and aldarate metabolism
pshq00071  Fatty acid degradation
pshq00230  Purine metabolism
pshq00250  Alanine, aspartate and glutamate metabolism
pshq00260  Glycine, serine and threonine metabolism
pshq00620  Pyruvate metabolism
pshq00710  Carbon fixation by Calvin cycle
pshq00750  Vitamin B6 metabolism
pshq00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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