KEGG   PATHWAY: psw02025
Entry
psw02025                    Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas cremoricolorata
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
psw02025  Biofilm formation - Pseudomonas aeruginosa
psw02025

Organism
Pseudomonas cremoricolorata [GN:psw]
Gene
LK03_03635  chemotaxis protein [KO:K02660]
LK03_03640  protein PilI [KO:K02659]
LK03_03630  chemotaxis protein CheA [KO:K06596]
LK03_03625  chemotaxis protein [KO:K06598]
LK03_03645  chemotaxis protein CheY [KO:K02658]
LK03_03650  chemotaxis protein CheY [KO:K02657]
LK03_03320  serine/threonine protein phosphatase [KO:K03651] [EC:3.1.4.53]
LK03_07580  cyclic AMP receptor protein [KO:K10914]
LK03_12540  ATPase AAA [KO:K10941]
LK03_00240  hypothetical protein [KO:K13061] [EC:2.3.1.184]
LK03_00235  hypothetical protein [KO:K18099]
LK03_01170  anthranilate synthase [KO:K01657] [EC:4.1.3.27]
LK03_07545  anthranilate synthase component I [KO:K01657] [EC:4.1.3.27]
LK03_01175  anthranilate synthase subunit II [KO:K01658] [EC:4.1.3.27]
LK03_07560  anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
LK03_11715  chemotaxis protein CheY [KO:K07678] [EC:2.7.13.3]
LK03_08365  histidine kinase [KO:K20971]
LK03_08515  histidine kinase [KO:K20972]
LK03_15695  chemotaxis protein CheY [KO:K07689]
LK03_16905  LuxR family transcriptional regulator [KO:K07689]
LK03_21640  carbon storage regulator [KO:K03563]
LK03_15275  hypothetical protein [KO:K03563]
LK03_15605  carbon storage regulator CsrA [KO:K03563]
LK03_13260  hypothetical protein [KO:K03563]
LK03_12275  carbon storage regulator [KO:K03563]
LK03_21160  histidine kinase [KO:K20973] [EC:2.7.13.3]
LK03_14135  histidine kinase [KO:K20974] [EC:2.7.13.3]
LK03_12585  histidine kinase [KO:K20976]
LK03_12430  flagellar biosynthesis anti-sigma factor FlgM [KO:K02398]
LK03_12655  fliA; flagellar biosynthesis sigma factor [KO:K02405]
LK03_04705  serine/threonine protein kinase [KO:K11912] [EC:2.7.11.1]
LK03_04710  PppA [KO:K11915] [EC:3.1.3.16]
LK03_04715  type VI secretion system protein ImpM [KO:K11890]
LK03_04720  type VI secretion protein IcmF [KO:K11891]
LK03_15825  type VI secretion protein VasK [KO:K11891]
LK03_04730  type VI secretion protein [KO:K11893]
LK03_15775  type VI secretion protein [KO:K11893]
LK03_04740  type VI secretion protein [KO:K11913]
LK03_04745  type VI secretion protein ImpA [KO:K11902]
LK03_04750  hypothetical protein [KO:K11901]
LK03_15810  type VI secretion protein [KO:K11901]
LK03_04755  EvpB family type VI secretion protein [KO:K11900]
LK03_15805  type VI secretion protein [KO:K11900]
LK03_04760  Hcp1 family type VI secretion system effector [KO:K11903]
LK03_15765  major exported protein [KO:K11903]
LK03_04775  type VI secretion protein [KO:K11895]
LK03_15790  type VI secretion protein [KO:K11895]
LK03_04780  ATPase AAA [KO:K11907]
LK03_01015  chemotaxis protein [KO:K13487]
LK03_00995  chemotaxis protein CheA [KO:K13490]
LK03_01010  chemotaxis protein CheW [KO:K13488]
LK03_01000  chemotaxis protein CheW [KO:K13489]
LK03_00990  chemotaxis protein CheY [KO:K13491] [EC:3.1.1.61]
LK03_00985  diguanylate cyclase [KO:K11444] [EC:2.7.7.65]
LK03_01485  diguanylate cyclase [KO:K21024] [EC:3.1.4.52]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
psw02024  Quorum sensing
psw02040  Flagellar assembly
psw03070  Bacterial secretion system
KO pathway
ko02025   
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