KEGG   PATHWAY: ptol00020
Entry
ptol00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas tolaasii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ptol00020  Citrate cycle (TCA cycle)
ptol00020

Module
ptol_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ptol00020]
ptol_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ptol00020]
ptol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ptol00020]
ptol_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ptol00020]
ptol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ptol00020]
Other DBs
GO: 0006099
Organism
Pseudomonas tolaasii [GN:ptol]
Gene
I7845_08850  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
I7845_21580  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
I7845_11655  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
I7845_07615  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
I7845_12885  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
I7845_17605  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I7845_17610  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I7845_08875  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
I7845_08880  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
I7845_18705  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I7845_08885  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I7845_08895  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
I7845_08890  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
I7845_00555  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
I7845_08865  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I7845_08870  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
I7845_08855  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
I7845_08860  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
I7845_23280  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
I7845_19940  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
I7845_04510  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
I7845_16585  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
I7845_04660  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
I7845_07900  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
I7845_28635  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
I7845_28630  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
I7845_01315  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
I7845_02365  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
I7845_15780  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
I7845_02360  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ptol00010  Glycolysis / Gluconeogenesis
ptol00053  Ascorbate and aldarate metabolism
ptol00061  Fatty acid biosynthesis
ptol00071  Fatty acid degradation
ptol00190  Oxidative phosphorylation
ptol00220  Arginine biosynthesis
ptol00250  Alanine, aspartate and glutamate metabolism
ptol00280  Valine, leucine and isoleucine degradation
ptol00350  Tyrosine metabolism
ptol00470  D-Amino acid metabolism
ptol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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