KEGG   PATHWAY: pver00630
Entry
pver00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paracoccus versutus
Class
Metabolism; Carbohydrate metabolism
Pathway map
pver00630  Glyoxylate and dicarboxylate metabolism
pver00630

Module
pver_M00373  Ethylmalonyl pathway [PATH:pver00630]
pver_M00621  Glycine cleavage system [PATH:pver00630]
pver_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pver00630]
Other DBs
GO: 0046487 0043648
Organism
Paracoccus versutus [GN:pver]
Gene
E3U25_11375  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
E3U25_00290  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
E3U25_00350  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
E3U25_07600  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
E3U25_08665  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
E3U25_10030  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
E3U25_06315  malate synthase G [KO:K01638] [EC:2.3.3.9]
E3U25_22170  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E3U25_09020  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E3U25_04165  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E3U25_11715  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
E3U25_12650  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E3U25_20695  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E3U25_00340  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E3U25_08720  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E3U25_10040  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E3U25_10230  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
E3U25_11710  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
E3U25_13465  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
E3U25_03475  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
E3U25_23165  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
E3U25_03755  protein meaA [KO:K14447] [EC:5.4.99.63]
E3U25_12550  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
E3U25_10380  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
E3U25_22195  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
E3U25_16380  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
E3U25_22180  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
E3U25_09185  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
E3U25_09160  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
E3U25_19030  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
E3U25_09205  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
E3U25_16965  methylaspartate mutase subunit S [KO:K01846] [EC:5.4.99.1]
E3U25_08140  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
E3U25_08135  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
E3U25_08130  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
E3U25_03120  catalase [KO:K03781] [EC:1.11.1.6]
E3U25_23745  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
E3U25_05285  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
E3U25_16420  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
E3U25_22515  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
E3U25_05355  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
E3U25_12310  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
E3U25_12305  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
E3U25_16735  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
E3U25_05160  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
E3U25_11360  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E3U25_14055  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E3U25_00100  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E3U25_09090  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E3U25_09775  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
E3U25_09470  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
E3U25_17695  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
E3U25_17705  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
E3U25_19595  aminomethyl transferase family protein [KO:K00605] [EC:2.1.2.10]
E3U25_22125  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E3U25_22545  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E3U25_17700  gcvH; glycine cleavage system protein GcvH [KO:K02437]
E3U25_13845  glycerate kinase [KO:K00865] [EC:2.7.1.165]
E3U25_02455  aldA; aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
E3U25_06020  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
E3U25_10310  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
E3U25_20020  twin-arginine translocation signal domain-containing protein [KO:K00123] [EC:1.17.1.9]
E3U25_20025  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
E3U25_10300  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
E3U25_20030  fdxH; formate dehydrogenase subunit beta [KO:K00124]
E3U25_10295  formate dehydrogenase beta subunit [KO:K00124]
E3U25_20035  formate dehydrogenase subunit gamma [KO:K00127]
E3U25_10290  formate dehydrogenase subunit gamma [KO:K00127]
E3U25_13145  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E3U25_19560  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E3U25_21020  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E3U25_10645  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E3U25_16815  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pver00010  Glycolysis / Gluconeogenesis
pver00020  Citrate cycle (TCA cycle)
pver00030  Pentose phosphate pathway
pver00053  Ascorbate and aldarate metabolism
pver00071  Fatty acid degradation
pver00230  Purine metabolism
pver00250  Alanine, aspartate and glutamate metabolism
pver00260  Glycine, serine and threonine metabolism
pver00620  Pyruvate metabolism
pver00710  Carbon fixation by Calvin cycle
pver00750  Vitamin B6 metabolism
pver00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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