KEGG   PATHWAY: pvm04146
Entry
pvm04146                    Pathway                                
Name
Peroxisome - Penaeus vannamei (Pacific white shrimp)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
pvm04146  Peroxisome
pvm04146

Other DBs
GO: 0005777
Organism
Penaeus vannamei (Pacific white shrimp) [GN:pvm]
Gene
113799947  Daao1; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
113800347  [KO:K13347]
113801983  [KO:K01640] [EC:4.1.3.4]
113802455  [KO:K05678] [EC:7.6.2.8]
113802552  Pex5; peroxisomal targeting signal 1 receptor [KO:K13342]
113802994  [KO:K13348]
113803334  [KO:K00106] [EC:1.17.1.4 1.17.3.2]
113804238  [KO:K13348]
113805022  Pex11ab; peroxisomal membrane protein 11A [KO:K13352]
113805335  [KO:K00477] [EC:1.14.11.18]
113805937  [KO:K13239] [EC:5.3.3.8]
113806121  Agps; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
113806352  [KO:K13348]
113806503  Pex3; peroxisomal biogenesis factor 3 [KO:K13336]
113807146  [KO:K13299] [EC:2.5.1.18]
113807166  [KO:K13349]
113807384  [KO:K04565] [EC:1.15.1.1]
113807546  [KO:K13239] [EC:5.3.3.8]
113807596  [KO:K00106] [EC:1.17.1.4 1.17.3.2]
113807833  Prx5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
113808465  [KO:K00624] [EC:2.3.1.7]
113808562  [KO:K13349]
113808882  [KO:K13356] [EC:1.2.1.84]
113809137  [KO:K07753] [EC:1.3.1.38]
113809380  [KO:K01897] [EC:6.2.1.3]
113809599  [KO:K00106] [EC:1.17.1.4 1.17.3.2]
113809633  [KO:K04565] [EC:1.15.1.1]
113810158  [KO:K13344]
113810973  [KO:K00477] [EC:1.14.11.18]
113811238  Pex19; peroxisomal biogenesis factor 19 [KO:K13337]
113811729  [KO:K00477] [EC:1.14.11.18]
113811796  Pex6; peroxisomal ATPase PEX6 [KO:K13339]
113812630  Pex16; peroxisomal membrane protein PEX16 [KO:K13335]
113812875  Pex1; peroxisomal ATPase PEX1 [KO:K13338]
113813493  [KO:K12663] [EC:5.3.3.21]
113813496  CROT; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
113814492  [KO:K13279] [EC:1.11.1.24]
113815071  [KO:K04565] [EC:1.15.1.1]
113816325  [KO:K00106] [EC:1.17.1.4 1.17.3.2]
113816330  [KO:K00106] [EC:1.17.1.4 1.17.3.2]
113816598  [KO:K06664]
113817072  Mvk; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
113817392  [KO:K13348]
113817851  [KO:K00306] [EC:1.5.3.1 1.5.3.7]
113817999  [KO:K04565] [EC:1.15.1.1]
113818099  Mfe2; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
113818229  Sod2; superoxide dismutase [Mn], mitochondrial-like [KO:K04564] [EC:1.15.1.1]
113818250  [KO:K00106] [EC:1.17.1.4 1.17.3.2]
113818451  [KO:K00232] [EC:1.3.3.6]
113818834  Agxt; alanine--glyoxylate aminotransferase isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
113820057  [KO:K03426] [EC:3.6.1.22]
113820698  [KO:K00106] [EC:1.17.1.4 1.17.3.2]
113820857  [KO:K05677] [EC:7.6.2.4]
113821045  Gnpat; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
113821249  [KO:K00106] [EC:1.17.1.4 1.17.3.2]
113821269  [KO:K13355] [EC:3.6.1.77]
113821460  [KO:K00232] [EC:1.3.3.6]
113821591  Daao2; D-aspartate oxidase [KO:K00273] [EC:1.4.3.3]
113821931  [KO:K00306] [EC:1.5.3.1 1.5.3.7]
113822117  [KO:K00106] [EC:1.17.1.4 1.17.3.2]
113823286  [KO:K08764] [EC:2.3.1.176]
113823288  [KO:K08764] [EC:2.3.1.176]
113823542  [KO:K13348]
113823550  [KO:K04564] [EC:1.15.1.1]
113823871  [KO:K01897] [EC:6.2.1.3]
113823999  [KO:K01578] [EC:4.1.1.9]
113824316  Dhrs4; dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
113824411  [KO:K00306] [EC:1.5.3.1 1.5.3.7]
113824636  Hao; uncharacterized protein Hao isoform X1 [KO:K11517] [EC:1.1.3.15]
113825168  Abcd1; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
113826906  [KO:K13348]
113827158  [KO:K00272] [EC:1.4.3.1]
113827276  Pex12; peroxisome assembly protein 12-B [KO:K13345]
113827514  [KO:K00306] [EC:1.5.3.1 1.5.3.7]
113827572  Acsl; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
113828244  Pex14; peroxisomal membrane protein PEX14 [KO:K13343]
113828344  [KO:K13239] [EC:5.3.3.8]
113828432  [KO:K13346]
113828491  [KO:K13239] [EC:5.3.3.8]
113829127  [KO:K00232] [EC:1.3.3.6]
113829617  [KO:K06664]
113829823  Hacl; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
113829844  PMP34; peroxisomal membrane protein PMP34 [KO:K13354]
113829896  Cat; catalase [KO:K03781] [EC:1.11.1.6]
113830051  ACOX1; acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
113830370  [KO:K04565] [EC:1.15.1.1]
113830388  Idh; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
138859292  [KO:K00306] [EC:1.5.3.1 1.5.3.7]
138860747  [KO:K13239] [EC:5.3.3.8]
138860776  [KO:K13239] [EC:5.3.3.8]
138861483  Pex11c; peroxisomal membrane protein 11C [KO:K13353]
138861666  [KO:K13344]
138863632  [KO:K13356] [EC:1.2.1.84]
138864386  [KO:K05677] [EC:7.6.2.4]
138864452  [KO:K01640] [EC:4.1.3.4]
138867613  Amacr; alpha-methylacyl-CoA racemase isoform X1 [KO:K01796] [EC:5.1.99.4]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
pvm00071  Fatty acid degradation
pvm00230  Purine metabolism
pvm00564  Glycerophospholipid metabolism
pvm00565  Ether lipid metabolism
pvm00830  Retinol metabolism
pvm00900  Terpenoid backbone biosynthesis
KO pathway
ko04146   

DBGET integrated database retrieval system