KEGG   PATHWAY: pvz00040
Entry
pvz00040                    Pathway                                
Name
Pentose and glucuronate interconversions - Pectobacterium versatile
Class
Metabolism; Carbohydrate metabolism
Pathway map
pvz00040  Pentose and glucuronate interconversions
pvz00040

Module
pvz_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:pvz00040]
pvz_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:pvz00040]
Organism
Pectobacterium versatile [GN:pvz]
Gene
OA04_01180  pmeB; pectin methylesterase [KO:K01051] [EC:3.1.1.11]
OA04_33330  pemA; pectinesterase A [KO:K01051] [EC:3.1.1.11]
OA04_21040  pelP; endo-pectate lyase [KO:K01728] [EC:4.2.2.2]
OA04_31130  pectate lyase [KO:K01728] [EC:4.2.2.2]
OA04_41190  pelA; pectate lyase I [KO:K01728] [EC:4.2.2.2]
OA04_41200  pelB; pectate lyase II [KO:K01728] [EC:4.2.2.2]
OA04_41210  pelC; pectate lyase III [KO:K01728] [EC:4.2.2.2]
OA04_23530  pelW; pectate disaccharide-lyase [KO:K01731] [EC:4.2.2.9]
OA04_45670  pelX; Pectate disaccharide-lyase [KO:K22994] [EC:4.2.2.9]
OA04_23780  ogl; oligogalacturonate lyase [KO:K01730] [EC:4.2.2.6]
OA04_23510  kdgF; pectin degradation protein [KO:K26933] [EC:4.2.99.25]
OA04_41800  kduI2; 5-keto-4-deoxyuronate isomerase [KO:K01815] [EC:5.3.1.17]
OA04_23520  kduD; 2-deoxy-D-gluconate 3-dehydrogenase [KO:K00065] [EC:1.1.1.127]
OA04_11370  pehA; endo-polygalacturonase [KO:K01184] [EC:3.2.1.15]
OA04_06090  uxaC; uronate isomerase [KO:K01812] [EC:5.3.1.12]
OA04_06100  uxaB1; altronate oxidoreductase [KO:K00041] [EC:1.1.1.58]
OA04_06110  uxaA; altronate hydrolase [KO:K01685] [EC:4.2.1.7]
OA04_11350  uxuA; mannonate dehydratase [KO:K01686] [EC:4.2.1.8]
OA04_02040  putative mandelate racemase / muconate lactonizing enzyme [KO:K08323] [EC:4.2.1.8]
OA04_03490  dgoA; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [KO:K08323] [EC:4.2.1.8]
OA04_09220  rspA; starvation sensing mandelate racemase / muconate lactonizing protein [KO:K08323] [EC:4.2.1.8]
OA04_08080  uxuB; D-mannonate oxidoreductase, NAD-dependent [KO:K00040] [EC:1.1.1.57]
OA04_09250  rspD; D-mannonate oxidoreductase [KO:K00040] [EC:1.1.1.57]
OA04_09230  rspB; Alcohol dehydrogenase GroES domain protein [KO:K08322] [EC:1.1.1.380]
OA04_31420  ugd; UDP-glucose 6-dehydrogenase [KO:K00012] [EC:1.1.1.22]
OA04_15190  galF; UTP-glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
OA04_22780  galU; UTP--glucose-1-phosphate uridylyltransferase subunit GalU [KO:K00963] [EC:2.7.7.9]
OA04_19040  araD; L-ribulose-5-phosphate 4-epimerase [KO:K03077] [EC:5.1.3.4]
OA04_41400  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
OA04_22320  araA; L-arabinose isomerase [KO:K01804] [EC:5.3.1.4]
OA04_22310  araB; L-ribulokinase [KO:K00853] [EC:2.7.1.16]
OA04_01080  xylB; xylulose kinase [KO:K00854] [EC:2.7.1.17]
OA04_29680  carbohydrate kinase FGGY [KO:K00854] [EC:2.7.1.17]
OA04_01090  xylA; xylose isomerase [KO:K01805] [EC:5.3.1.5]
OA04_05110  rhaB; rhamnulokinase [KO:K00848] [EC:2.7.1.5]
OA04_05090  rhaD; rhamnulose-1-phosphate aldolase [KO:K01629] [EC:4.1.2.19]
Compound
C00022  Pyruvate
C00026  2-Oxoglutarate
C00029  UDP-glucose
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00116  Glycerol
C00167  UDP-glucuronate
C00181  D-Xylose
C00191  D-Glucuronate
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00216  D-Arabinose
C00231  D-Xylulose 5-phosphate
C00259  L-Arabinose
C00266  Glycolaldehyde
C00309  D-Ribulose
C00310  D-Xylulose
C00312  L-Xylulose
C00333  D-Galacturonate
C00379  Xylitol
C00433  2,5-Dioxopentanoate
C00470  Pectate
C00474  Ribitol
C00476  D-Lyxose
C00502  D-Xylonate
C00508  L-Ribulose
C00514  D-Mannonate
C00532  L-Arabitol
C00558  D-Tagaturonate
C00618  3-Dehydro-L-gulonate
C00714  Pectin
C00789  CDP-ribitol
C00800  L-Gulonate
C00817  D-Altronate
C00905  D-Fructuronate
C01068  D-Ribitol 5-phosphate
C01101  L-Ribulose 5-phosphate
C01508  L-Lyxose
C01904  D-Arabitol
C02266  D-Xylonolactone
C02273  Digalacturonate
C02426  L-Glyceraldehyde
C02753  D-Xylono-1,4-lactone
C03033  beta-D-Glucuronoside
C03291  L-Xylulose 5-phosphate
C03826  2-Dehydro-3-deoxy-D-xylonate
C04053  5-Dehydro-4-deoxy-D-glucuronate
C04349  (4S)-4,6-Dihydroxy-2,5-dioxohexanoate
C04575  (4R,5S)-4,5,6-Trihydroxy-2,3-dioxohexanoate
C05385  D-Glucuronate 1-phosphate
C05411  L-Xylonate
C05412  L-Lyxonate
C06118  4-(4-Deoxy-alpha-D-gluc-4-enuronosyl)-D-galacturonate
C06441  L-Xylulose 1-phosphate
C14899  3-Dehydro-L-gulonate 6-phosphate
C15930  L-Galactonate
C20680  2-Dehydro-3-deoxy-L-galactonate
C22337  D-Ribulose 1-phosphate
C22712  4-Deoxy-L-threo-hex-4-enopyranuronate
Reference
PMID:11741871
  Authors
Yew WS, Gerlt JA.
  Title
Utilization of L-ascorbate by Escherichia coli K-12: assignments of functions to products of the yjf-sga and yia-sgb operons.
  Journal
J Bacteriol 184:302-6 (2002)
DOI:10.1128/JB.184.1.302-306.2002
Reference
PMID:15697206
  Authors
Yew WS, Akana J, Wise EL, Rayment I, Gerlt JA
  Title
Evolution of enzymatic activities in the orotidine 5'-monophosphate decarboxylase suprafamily: enhancing the promiscuous D-arabino-hex-3-ulose 6-phosphate synthase reaction catalyzed by 3-keto-L-gulonate 6-phosphate decarboxylase.
  Journal
Biochemistry 44:1807-15 (2005)
DOI:10.1021/bi047815v
Reference
PMID:10572115
  Authors
Yasueda H, Kawahara Y, Sugimoto S.
  Title
Bacillus subtilis yckG and yckF encode two key enzymes of the ribulose monophosphate pathway used by methylotrophs, and yckH is required for their expression.
  Journal
J Bacteriol 181:7154-60 (1999)
DOI:10.1128/JB.181.23.7154-7160.1999
Reference
PMID:10913097
  Authors
Ibanez E, Gimenez R, Pedraza T, Baldoma L, Aguilar J, Badia J
  Title
Role of the yiaR and yiaS genes of Escherichia coli in metabolism of endogenously formed L-xylulose.
  Journal
J Bacteriol 182:4625-7 (2000)
DOI:10.1128/JB.182.16.4625-4627.2000
Reference
PMID:15901685
  Authors
Orita I, Yurimoto H, Hirai R, Kawarabayasi Y, Sakai Y, Kato N
  Title
The archaeon Pyrococcus horikoshii possesses a bifunctional enzyme for formaldehyde fixation via the ribulose monophosphate pathway.
  Journal
J Bacteriol 187:3636-42 (2005)
DOI:10.1128/JB.187.11.3636-3642.2005
Related
pathway
pvz00010  Glycolysis / Gluconeogenesis
pvz00020  Citrate cycle (TCA cycle)
pvz00030  Pentose phosphate pathway
pvz00052  Galactose metabolism
pvz00053  Ascorbate and aldarate metabolism
pvz00500  Starch and sucrose metabolism
pvz00520  Amino sugar and nucleotide sugar metabolism
pvz00561  Glycerolipid metabolism
pvz00562  Inositol phosphate metabolism
pvz00740  Riboflavin metabolism
KO pathway
ko00040   
LinkDB

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