KEGG   PATHWAY: pye00630
Entry
pye00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paracoccus yeei
Class
Metabolism; Carbohydrate metabolism
Pathway map
pye00630  Glyoxylate and dicarboxylate metabolism
pye00630

Module
pye_M00373  Ethylmalonyl pathway [PATH:pye00630]
pye_M00621  Glycine cleavage system [PATH:pye00630]
pye_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pye00630]
Other DBs
GO: 0046487 0043648
Organism
Paracoccus yeei [GN:pye]
Gene
A6J80_20100  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
A6J80_00700  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
A6J80_02135  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
A6J80_18150  malate synthase G [KO:K01638] [EC:2.3.3.9]
A6J80_13285  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A6J80_04310  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A6J80_14350  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
A6J80_00710  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
A6J80_09305  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
A6J80_01180  thiolase family protein [KO:K00626] [EC:2.3.1.9]
A6J80_04890  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A6J80_07290  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
A6J80_07295  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
A6J80_02655  (R)-hydratase [KO:K17865] [EC:4.2.1.55]
A6J80_12555  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
A6J80_14305  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
A6J80_12665  protein meaA [KO:K14447] [EC:5.4.99.63]
A6J80_04750  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
A6J80_13315  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
A6J80_07835  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
A6J80_13300  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
A6J80_17705  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
A6J80_17730  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
A6J80_17685  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
A6J80_18365  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
A6J80_18370  2-hydroxy-acid oxidase [KO:K11472] [EC:1.1.99.14]
A6J80_18375  4Fe-4S dicluster domain-containing protein [KO:K11473] [EC:1.1.99.14]
A6J80_17010  catalase [KO:K03781] [EC:1.11.1.6]
A6J80_15060  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
A6J80_03805  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
A6J80_14940  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
A6J80_07875  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
A6J80_18535  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
A6J80_11690  rbcL; form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
A6J80_11695  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
A6J80_06650  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
A6J80_18870  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
A6J80_04035  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
A6J80_04370  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
A6J80_04395  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
A6J80_01560  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
A6J80_15705  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
A6J80_08835  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
A6J80_08845  gcvT; glycine cleavage system aminomethyltransferase T [KO:K00605] [EC:2.1.2.10]
A6J80_01580  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
A6J80_01590  aminomethyl transferase family protein [KO:K00605] [EC:2.1.2.10]
A6J80_13240  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A6J80_14910  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A6J80_08840  gcvH; glycine cleavage system protein H [KO:K02437]
A6J80_19645  glycerate kinase [KO:K00865] [EC:2.7.1.165]
A6J80_21485  glycerate kinase [KO:K11529] [EC:2.7.1.165]
A6J80_08125  glycerate kinase [KO:K11529] [EC:2.7.1.165]
A6J80_12580  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
A6J80_03750  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
A6J80_04815  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
A6J80_04825  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
A6J80_09805  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
A6J80_04830  formate dehydrogenase [KO:K00124]
A6J80_09800  fdxH; formate dehydrogenase subunit beta [KO:K00124]
A6J80_04835  formate dehydrogenase subunit gamma [KO:K00127]
A6J80_09795  formate dehydrogenase subunit gamma [KO:K00127]
A6J80_21565  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
A6J80_11460  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
A6J80_01640  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
A6J80_14560  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pye00010  Glycolysis / Gluconeogenesis
pye00020  Citrate cycle (TCA cycle)
pye00030  Pentose phosphate pathway
pye00053  Ascorbate and aldarate metabolism
pye00071  Fatty acid degradation
pye00230  Purine metabolism
pye00250  Alanine, aspartate and glutamate metabolism
pye00260  Glycine, serine and threonine metabolism
pye00620  Pyruvate metabolism
pye00710  Carbon fixation by Calvin cycle
pye00750  Vitamin B6 metabolism
pye00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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